View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4724_low_1 (Length: 814)

Name: NF4724_low_1
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4724_low_1
NF4724_low_1
[»] chr8 (11 HSPs)
chr8 (132-504)||(6580461-6580837)
chr8 (341-588)||(6616348-6616590)
chr8 (345-529)||(6757681-6757861)
chr8 (345-529)||(6659686-6659866)
chr8 (345-529)||(6740088-6740268)
chr8 (12-137)||(6581019-6581144)
chr8 (634-774)||(6616205-6616351)
chr8 (12-60)||(6612385-6612433)
chr8 (267-321)||(35793178-35793232)
chr8 (286-325)||(5945357-5945396)
chr8 (267-321)||(22786554-22786608)
[»] scaffold0470 (3 HSPs)
scaffold0470 (341-588)||(5634-5876)
scaffold0470 (634-774)||(5491-5637)
scaffold0470 (12-60)||(1673-1721)
[»] chr4 (2 HSPs)
chr4 (271-321)||(9116266-9116316)
chr4 (271-325)||(40202280-40202334)
[»] chr3 (5 HSPs)
chr3 (271-321)||(39994200-39994250)
chr3 (271-321)||(4037150-4037200)
chr3 (271-321)||(10688617-10688667)
chr3 (271-321)||(11233515-11233565)
chr3 (271-321)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (271-322)||(36436058-36436109)
chr7 (271-321)||(16876748-16876798)
chr7 (271-321)||(18867959-18868009)
chr7 (271-321)||(23185934-23185984)
chr7 (271-321)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (271-321)||(6139327-6139377)
chr6 (271-321)||(7506641-7506691)
chr6 (271-321)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (271-321)||(3496810-3496860)
chr2 (271-321)||(11226155-11226205)
chr2 (271-321)||(15141889-15141939)
chr2 (271-321)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (267-321)||(26478571-26478625)
chr1 (271-321)||(27032331-27032381)
chr1 (271-321)||(27907712-27907762)
chr1 (271-321)||(51748561-51748611)
chr1 (271-320)||(24671166-24671215)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 132 - 504
Target Start/End: Complemental strand, 6580837 - 6580461
Alignment:
Q  132 aacctagaaaacaagagtgacaga--ccacaaaggacaaaaacattaacaccatgttgtgagaaaaataga--ataaaaagaatctcattttggttatca 227  Q
    |||||| |||||||||||||||||  |||  |||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  6580837 aacctaaaaaacaagagtgacagagaccaggaaggacaaaagcattgacaccatgttgtgagaaaaatagagaataaaaagaatctcattttggctatca 6580738  T
Q  228 tcgacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaaat 327  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  6580737 tctacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattatatgagagagaatgagtagttaaaagagaaatatgaaat 6580638  T
Q  328 gatacatttgttgcttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgat 427  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  6580637 gatacatttgttgcttgtcaagcactatggattaaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttctcgctaacaattgat 6580538  T
Q  428 ttagcaaattatcaattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaac 504  Q
    |||| |||||||||||||||||||||| ||| ||||||||||| | |||||||| |||||||||| |||||||||||    
T  6580537 ttagaaaattatcaattaaccatggaaaaagcaagcatgttgaaaggagatttcgcttactaagagataaagttaac 6580461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 341 - 588
Target Start/End: Complemental strand, 6616590 - 6616348
Alignment:
Q  341 cttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatc 440  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  6616590 cttgtcaagcactatggattgaaatgttgcttgaagaattgaatattactgagattgcttgaatgaaacttcttgttaacaattcatttagcaaattatc 6616491  T
Q  441 aattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaactttattattgcaaaa 540  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||    
T  6616490 aattaaccatggaaaaagcaagcatgttgaaaggagatttcacttactaagagataaagt-----taacaaagatagtttggaactttattattgcaaaa 6616396  T
Q  541 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6616395 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 6616348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 345 - 529
Target Start/End: Complemental strand, 6757861 - 6757681
Alignment:
Q  345 tcaagcactaaggattgaaatgtt-gcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatcaat 443  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  6757861 tcaagcactatggattgaaatgtttgcttgaagaattgaagattattgagattgcttgaatgaaacttctttttgacaattgatttagcaaattagcaat 6757762  T
Q  444 taaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaacttta 529  Q
    ||||||||||||||| ||||||||||| | |||||||||||| |||||| || ||||     ||||||||||||||| ||||||||    
T  6757761 taaccatggaagaagcaagcatgttgaaaggagatttcacttcctaagagatcaagt-----taacaaagatagtttcgaacttta 6757681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 345 - 529
Target Start/End: Complemental strand, 6659866 - 6659686
Alignment:
Q  345 tcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaatta-tcaat 443  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6659866 tcaagtactatggattgaaatgttgcttgaagaattgaagattattgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattactcaat 6659767  T
Q  444 taaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaacttta 529  Q
    ||||||||||||||| ||||||||||| |  |||||| |||| ||| || || ||||     ||||||||||||||| ||||||||    
T  6659766 taaccatggaagaagcaagcatgttgaaagtagatttgacttcctacgagatcaagt-----taacaaagatagtttcgaacttta 6659686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 345 - 529
Target Start/End: Complemental strand, 6740268 - 6740088
Alignment:
Q  345 tcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaatta-tcaat 443  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6740268 tcaagtactatggattgaaatgttgcttgaagaattgaagattattgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattactcaat 6740169  T
Q  444 taaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaacttta 529  Q
    ||||||||||||||| ||||||||||| |  |||||| |||| ||| || || ||||     ||||||||||||||| ||||||||    
T  6740168 taaccatggaagaagcaagcatgttgaaagtagatttgacttcctacgagatcaagt-----taacaaagatagtttcgaacttta 6740088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 6581144 - 6581019
Alignment:
Q  12 agagaggaggggataaggagagaaatatgaggcatatatagtagacgtataaaagaaccgacatcgtagatgttttaaggaaagagacacaagggaccac 111  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||    
T  6581144 agagaggaggggataaggagagaaatatgaagcatatataatagatgtataaaagaacccacatcgaagattttttaaggaaagagatacaagggaccac 6581045  T
Q  112 aacttcaactctttcacttaaaccta 137  Q
    ||||||||||||||||  ||||||||    
T  6581044 aacttcaactctttcaagtaaaccta 6581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 634 - 774
Target Start/End: Complemental strand, 6616351 - 6616205
Alignment:
Q  634 gcaatcatgaattaggaggtgtgaagtgttgtaattcatgattagataatgattacttgttga----accagttatctatgttgttaagtaactttcttg 729  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |    || |||||||||||||||||| |||| |||| |    
T  6616351 gcaatcatgaattaggaggtctgaa-tgttgtaattcatgattagatactgattacttgttaattaaacaagttatctatgttgttaactaacattctag 6616253  T
Q  730 tttgttat---gaaagttagtcgattagtatagttagtattggtagtt 774  Q
    ||||||||   ||||||||||||||||||| |||||||||||||||||    
T  6616252 tttgttattatgaaagttagtcgattagtacagttagtattggtagtt 6616205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 6612433 - 6612385
Alignment:
Q  12 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612433 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 6612385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 35793232 - 35793178
Alignment:
Q  267 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||||||| | |||||||||||| ||||||||||||| |||||||||    
T  35793232 aataattaaaataaattatttaaatgagagataatgagtagttaagagagagata 35793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 5945357 - 5945396
Alignment:
Q  286 ttaaatgagagagaatgagtagttaaaagagagatatgaa 325  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5945357 ttaaatgagagagaatgattagttaaaagagagatatgaa 5945396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 22786608 - 22786554
Alignment:
Q  267 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||| ||||| | |||||||| ||||||||| | |||||||||||||||    
T  22786608 aataattaaagtaaattatttaaatgaaagagaatgaatggttaaaagagagata 22786554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 341 - 588
Target Start/End: Complemental strand, 5876 - 5634
Alignment:
Q  341 cttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatc 440  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  5876 cttgtcaagcactatggattgaaatgttgcttgaagaattgaatattactgagattgcttgaatgaaacttcttgttaacaattcatttagcaaattatc 5777  T
Q  441 aattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaactttattattgcaaaa 540  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||    
T  5776 aattaaccatggaaaaagcaagcatgttgaaaggagatttcacttactaagagataaagt-----taacaaagatagtttggaactttattattgcaaaa 5682  T
Q  541 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5681 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 5634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 634 - 774
Target Start/End: Complemental strand, 5637 - 5491
Alignment:
Q  634 gcaatcatgaattaggaggtgtgaagtgttgtaattcatgattagataatgattacttgttga----accagttatctatgttgttaagtaactttcttg 729  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |    || |||||||||||||||||| |||| |||| |    
T  5637 gcaatcatgaattaggaggtctgaa-tgttgtaattcatgattagatactgattacttgttaattaaacaagttatctatgttgttaactaacattctag 5539  T
Q  730 tttgttat---gaaagttagtcgattagtatagttagtattggtagtt 774  Q
    ||||||||   ||||||||||||||||||| |||||||||||||||||    
T  5538 tttgttattatgaaagttagtcgattagtacagttagtattggtagtt 5491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 1721 - 1673
Alignment:
Q  12 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1721 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 1673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 9116266 - 9116316
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | |||||||||||||||||||| ||||||| |||||||    
T  9116266 attaaaataaattatttaaatgagagagaatgagttgttaaaaaagagata 9116316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 40202280 - 40202334
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaa 325  Q
    |||||||||||| | ||| |||| ||||||||||| ||||||||||| |||||||    
T  40202280 attaaaataaattatttagatgaaagagaatgagtggttaaaagagacatatgaa 40202334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 39994250 - 39994200
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| |||||||||||||||    
T  39994250 attaaaataaattatttagatgagagagaatgagttgttaaaagagagata 39994200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 4037200 - 4037150
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  4037200 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 4037150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 10688667 - 10688617
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  10688667 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 10688617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 11233565 - 11233515
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11233565 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11233515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 49279548 - 49279498
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  49279548 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 49279498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 36436058 - 36436109
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatat 322  Q
    |||||||||||||| ||  |||||||||||||| |||||| |||||||||||    
T  36436058 attaaaataaatcattttgatgagagagaatgattagttagaagagagatat 36436109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 16876748 - 16876798
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  16876748 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 16876798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 18867959 - 18868009
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  18867959 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 18868009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 23185934 - 23185984
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  23185934 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 23185984  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 46425349 - 46425399
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  46425349 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 46425399  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 6139377 - 6139327
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||| | |||||||||||||||    
T  6139377 attaaaataaattatttagatgagagagaatgaatggttaaaagagagata 6139327  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 7506691 - 7506641
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  7506691 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 7506641  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 9928320 - 9928270
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  9928320 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 9928270  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 3496810 - 3496860
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  3496810 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 3496860  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 11226205 - 11226155
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11226205 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11226155  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 15141939 - 15141889
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||| ||| |||||||||||||||    
T  15141939 attaaaataaattatttagatgagagagaataagttgttaaaagagagata 15141889  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 19037078 - 19037128
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  19037078 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 19037128  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 26478625 - 26478571
Alignment:
Q  267 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||||||||| |||||||| ||| ||||| | ||||||||| |||||    
T  26478625 aataattaaaataaatcatttaaatgaaagataatgaattgttaaaagaaagata 26478571  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 27032331 - 27032381
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27032331 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27032381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 27907762 - 27907712
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27907762 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27907712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 51748611 - 51748561
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 321  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||| |||||    
T  51748611 attaaaataaattatttagatgagagagaatgagttgttaaaagaaagata 51748561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 24671215 - 24671166
Alignment:
Q  271 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagat 320  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||| ||||    
T  24671215 attaaaataaattatttaaatgagagagaatgagtggttaagagaaagat 24671166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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