View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4724_low_13 (Length: 239)

Name: NF4724_low_13
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4724_low_13
NF4724_low_13
[»] chr2 (3 HSPs)
chr2 (23-239)||(18627823-18628037)
chr2 (73-152)||(7250341-7250418)
chr2 (73-129)||(2140511-2140567)
[»] chr5 (2 HSPs)
chr5 (47-152)||(31206334-31206438)
chr5 (42-131)||(10869588-10869675)
[»] chr1 (3 HSPs)
chr1 (50-146)||(37047086-37047181)
chr1 (40-132)||(19480619-19480711)
chr1 (75-152)||(39714652-39714728)
[»] chr7 (1 HSPs)
chr7 (93-152)||(38372982-38373041)
[»] chr4 (2 HSPs)
chr4 (42-152)||(54127344-54127452)
chr4 (76-158)||(13486289-13486371)
[»] chr6 (1 HSPs)
chr6 (41-129)||(1345021-1345107)
[»] chr8 (1 HSPs)
chr8 (83-130)||(3945720-3945767)
[»] chr3 (2 HSPs)
chr3 (73-150)||(34844495-34844569)
chr3 (42-131)||(51532876-51532963)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 18627823 - 18628037
Alignment:
Q  23 tgcttatgtataaaggctagtgggctaagtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttgga 122  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||  |||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  18627823 tgcttatgtataaaggctagtgggctaggtccatacagagctatg--ctagctttaaatgggcccctccgcaagtggacagtgggattggaccccttgga 18627920  T
Q  123 ttagtcggtcgttgggcctgatactgagttataaaacttaggtcaagttaatatgattcctcactaaaaatatactaaatcaaccaccaagtattgtttt 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18627921 ttagtcggtcgttgggcctgatactgagtaataaaacttaggtcaagttaatatgattcctcactaaaaatatactaaatcaaccaccaagtattgtttt 18628020  T
Q  223 aaattgtggtcacagtt 239  Q
    |||||||||||||||||    
T  18628021 aaattgtggtcacagtt 18628037  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 7250341 - 7250418
Alignment:
Q  73 gctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtcgttgggcctgatactgagtt 152  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||| ||||||||| ||| ||||||| ||||| |||||    
T  7250341 gctttaaatgggcccc--ctaaagtggacagtgggattggacccctcggattagtccgtccttgggccagataccgagtt 7250418  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 2140567 - 2140511
Alignment:
Q  73 gctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcg 129  Q
    |||||||||||||||| || ||||||| | |||||||| | ||||| ||||||||||    
T  2140567 gctttaaatgggcccccccgcaagtgggcggtgggattggtcccctcggattagtcg 2140511  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 31206334 - 31206438
Alignment:
Q  47 ctaagtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtcgttgggcctgatac 146  Q
    ||||||| |||| |||||||| ||| |||||||||||| ||| || ||||||||| |||||||| ||| ||| ||||||||||||| ||||||| |||||    
T  31206334 ctaagtccatacagagctatgctcttgctttaaatgggaccc-ccacaagtggacggtgggattggactcctcggattagtcggtccttgggccggatac 31206432  T
Q  147 tgagtt 152  Q
     |||||    
T  31206433 cgagtt 31206438  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 10869675 - 10869588
Alignment:
Q  42 gtgggctaagtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggt 131  Q
    |||||||||||| | |||||||| || ||| |||||||||||| || ||| ||||||| | |||||||| | ||||| ||||||||||||    
T  10869675 gtgggctaagtccacactgagct-tgctctggctttaaatggggcc-tccgcaagtgggcggtgggattggtcccctcggattagtcggt 10869588  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 37047086 - 37047181
Alignment:
Q  50 agtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtcgttgggcctgatac 146  Q
    |||| |||| ||||| || |||||||||||||||| ||| || ||||||||| |||||||| ||||||| ||||||||||| | ||||||| |||||    
T  37047086 agtccatacagagctttgctctagctttaaatggggccc-ccacaagtggacggtgggattggacccctaggattagtcggcccttgggcccgatac 37047181  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 19480619 - 19480711
Alignment:
Q  40 tagtgggctaagtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtc 132  Q
    |||||||||||||| |||  |||||||| ||| ||||||||||||  || || || |||||| |||||||| || |||| || ||||||||||    
T  19480619 tagtgggctaagtccatatagagctatgctctggctttaaatgggtacccccgcacgtggacggtgggattggatccctcgggttagtcggtc 19480711  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 39714728 - 39714652
Alignment:
Q  75 tttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtcgttgggcctgatactgagtt 152  Q
    |||||||||||||| || ||||||||  |||||||| ||| ||| ||||||||||||| ||||||  ||||| |||||    
T  39714728 tttaaatgggcccc-ccacaagtggatggtgggattggactcctcggattagtcggtccttgggctggataccgagtt 39714652  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 38373041 - 38372982
Alignment:
Q  93 caagtggacagtgggattagaccccttggattagtcggtcgttgggcctgatactgagtt 152  Q
    ||||||||| |||||||| ||||||||||||||||||||| ||||| | |||||||||||    
T  38373041 caagtggacggtgggattggaccccttggattagtcggtccttgggtcagatactgagtt 38372982  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 54127452 - 54127344
Alignment:
Q  42 gtgggctaagtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtcgttgggcct 141  Q
    ||||||||||||||||| ||||| || ||| |||||||| ||| ||| || ||||||| | |||||||| | ||||| ||||||||||||  |||| ||     
T  54127452 gtgggctaagtctatacagagct-tgctctggctttaaacggggccc-ccgcaagtgggcggtgggattggtcccctcggattagtcggttcttggaccg 54127355  T
Q  142 gatactgagtt 152  Q
    |||||||||||    
T  54127354 gatactgagtt 54127344  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 13486371 - 13486289
Alignment:
Q  76 ttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtcgttgggcctgatactgagttataaaa 158  Q
    ||||||||| ||| || |||||||||||||||||| |||||||  |||||||| ||  |||||||  |||| ||||| |||||    
T  13486371 ttaaatggggccccccgcaagtggacagtgggatttgacccctcagattagtcagttcttgggccaaataccgagttttaaaa 13486289  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 1345021 - 1345107
Alignment:
Q  41 agtgggctaagtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcg 129  Q
    ||||||||||||| ||||  |||| || ||| |||||||| ||||||| || ||||||||| |||||||| | ||||||||||||||||    
T  1345021 agtgggctaagtccatacaaagct-tgctctggctttaaacgggcccc-ccgcaagtggacggtgggattggtccccttggattagtcg 1345107  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 3945767 - 3945720
Alignment:
Q  83 ggcccctcctcaagtggacagtgggattagaccccttggattagtcgg 130  Q
    ||||||||| ||||||||| |||||||| ||||| |||||||||||||    
T  3945767 ggcccctccgcaagtggacggtgggattggacccattggattagtcgg 3945720  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 34844495 - 34844569
Alignment:
Q  73 gctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggtcgttgggcctgatactgag 150  Q
    ||||||||||||||||  | ||||||||  |||||||| ||||||| ||||||||||||| || |||| |||||||||    
T  34844495 gctttaaatgggcccc--cgcaagtggatggtgggattggacccctcggattagtcggtcctt-ggcccgatactgag 34844569  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 51532876 - 51532963
Alignment:
Q  42 gtgggctaagtctatactgagctatgatctagctttaaatgggcccctcctcaagtggacagtgggattagaccccttggattagtcggt 131  Q
    |||||||||||| |||| ||||| || |||| ||||||||||| ||| || ||||||||| |||||||| | |||||  |||||||||||    
T  51532876 gtgggctaagtccatacagagct-tgctctaactttaaatgggaccc-ccgcaagtggacggtgggattggtcccctcagattagtcggt 51532963  T

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