View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4724_low_14 (Length: 225)

Name: NF4724_low_14
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4724_low_14
NF4724_low_14
[»] chr8 (5 HSPs)
chr8 (1-175)||(7540546-7540719)
chr8 (1-37)||(7649530-7649566)
chr8 (1-37)||(26703948-26703984)
chr8 (1-37)||(40249938-40249974)
chr8 (1-37)||(43875035-43875071)
[»] scaffold1086 (1 HSPs)
scaffold1086 (1-37)||(2489-2525)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-37)||(159015-159051)
[»] chr7 (3 HSPs)
chr7 (1-37)||(4104481-4104517)
chr7 (1-37)||(14967692-14967728)
chr7 (1-37)||(15397168-15397204)
[»] chr6 (4 HSPs)
chr6 (1-37)||(5288403-5288439)
chr6 (1-37)||(9491793-9491829)
chr6 (1-37)||(12291171-12291207)
chr6 (1-37)||(30566059-30566095)
[»] chr5 (4 HSPs)
chr5 (1-37)||(20945949-20945985)
chr5 (1-37)||(22599993-22600029)
chr5 (1-37)||(23925544-23925580)
chr5 (1-37)||(33800894-33800930)
[»] chr4 (1 HSPs)
chr4 (1-37)||(9172429-9172465)
[»] chr3 (2 HSPs)
chr3 (1-37)||(33072291-33072327)
chr3 (1-37)||(41121872-41121908)
[»] chr2 (7 HSPs)
chr2 (1-37)||(10262740-10262776)
chr2 (1-37)||(15392269-15392305)
chr2 (1-37)||(26807142-26807178)
chr2 (1-37)||(31564096-31564132)
chr2 (1-37)||(31956867-31956903)
chr2 (1-37)||(33956257-33956293)
chr2 (1-37)||(36426914-36426950)
[»] chr1 (6 HSPs)
chr1 (1-37)||(15774370-15774406)
chr1 (1-37)||(19793527-19793563)
chr1 (1-37)||(20357461-20357497)
chr1 (1-37)||(20562458-20562494)
chr1 (1-37)||(37490891-37490927)
chr1 (1-37)||(49251453-49251489)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 7540546 - 7540719
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctcagatgactttggttacaaaaatgatgtatattagttaagaggatttgtataaaggaattgttaa 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7540546 ataataatgcattgtcctaccaagtgagttatgctcacatgacattggttacaaaaatgatgtatattagttaagaggatttgtataaaggaattgttaa 7540645  T
Q  101 tacaataaaaatttaaataaactctataaaatggataaagaaatttctcaaaaggatcatgtatttaatttataa 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7540646 tacaacaaaaatttaaataaactctataaaatggataaagaaatttctc-aaaggatcatgtatttaatttataa 7540719  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7649566 - 7649530
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  7649566 ataataatgcattgtcctaccaagtgagctatgctca 7649530  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26703948 - 26703984
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  26703948 ataataatgcattgtcctaccaactgagttatgctca 26703984  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40249938 - 40249974
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  40249938 ataataatgcattgtcctaccaactgagttatgctca 40249974  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43875035 - 43875071
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  43875035 ataataatgcattgtcctatcaactgagttatgctca 43875071  T

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Target: scaffold1086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2525 - 2489
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  2525 ataataatgcattgtcctaccaactgagttatgctca 2489  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 159051 - 159015
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  159051 ataataatgcattgtcctaccaactgagttatgctca 159015  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4104517 - 4104481
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  4104517 ataataatgcattgtcctaacaattgagctatgctca 4104481  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14967692 - 14967728
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  14967692 ataataatgcattgtcctaccaactgagttatgctca 14967728  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15397168 - 15397204
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  15397168 ataataatgcattgtcctaccaactgagttatgctca 15397204  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5288403 - 5288439
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  5288403 ataataatgcattgtcctaccaactgagttatgctca 5288439  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9491793 - 9491829
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  9491793 ataataatgcattgtcctaccaactgagttatgctca 9491829  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12291207 - 12291171
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  12291207 ataataatgcattgttctaacaactgagttatgctca 12291171  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30566095 - 30566059
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  30566095 ataataatgcattgtcctaccaactgagttatgctca 30566059  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20945949 - 20945985
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  20945949 ataataatgcattgtcctaccaattgagttatgctca 20945985  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22599993 - 22600029
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  22599993 ataataatgcattgtcctaccaactgagttatgctca 22600029  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23925580 - 23925544
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  23925580 ataataatgcattgtcctatcaactgagttatgctca 23925544  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33800930 - 33800894
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  33800930 ataataatgcattgtcctaccaactgagttatgctca 33800894  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9172429 - 9172465
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  9172429 ataataatgcattgtcctaccaactgagttatgctca 9172465  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33072327 - 33072291
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  33072327 ataataatgcattgtcctatcaactgagttatgctca 33072291  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41121908 - 41121872
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  41121908 ataataatgcattgtcctaccaactgagttatgctca 41121872  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10262776 - 10262740
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  10262776 ataataatgcattgtcctaccaactgagttatgctca 10262740  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15392269 - 15392305
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  15392269 ataataatgcattgtcctaccaactgagttatgctca 15392305  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26807142 - 26807178
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  26807142 ataataatgcattgtcctaccaactgagttatgctca 26807178  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31564132 - 31564096
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  31564132 ataataatgcattgtcctaccaactgagttatgctca 31564096  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31956903 - 31956867
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  31956903 ataataatgcattgtcctaccaactgagttatgctca 31956867  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33956293 - 33956257
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  33956293 ataataatgcattgtcctaccaattgagttatgctca 33956257  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36426914 - 36426950
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  36426914 ataataatgcattgtcctaccaagtgagctatgctca 36426950  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15774370 - 15774406
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  15774370 ataataatgcattgtcctaccaactgagttatgctca 15774406  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19793563 - 19793527
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  19793563 ataataatgcattgtcctaccaactgagttatgctca 19793527  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20357497 - 20357461
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  20357497 ataataatgcattgtcctaccaactgagttatgctca 20357461  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20562458 - 20562494
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  20562458 ataataatgcattgtcctaccaactgagttatgctca 20562494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37490927 - 37490891
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  37490927 ataataatgcattgtcctaccaactgagttatgctca 37490891  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49251453 - 49251489
Alignment:
Q  1 ataataatgcattgtcctaacaagtgagttatgctca 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  49251453 ataataatgcattgtcctaccaactgagttatgctca 49251489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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