View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4724_low_2 (Length: 610)
Name: NF4724_low_2
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4724_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 11 - 593
Target Start/End: Complemental strand, 40736282 - 40735698
Alignment:
| Q |
11 |
atcatcaactatacgataggaataacagcaaatacaagcacatccttctccgacatgcccattttttctttcaattcggtacctctatattattttttct |
110 |
Q |
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| T |
40736282 |
atcatcaactatacgataggaataacagcaaatacaagcacatccttctccgacatgcccattttttctttcaattcggtacctctatattattttttct |
40736183 |
T |
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| Q |
111 |
gatgtaaccttgcaaatcctcgcaggtatacac--gccctaagctatatgtctgaagttttccttgagtacattttttgtaacccttttataactgagtt |
208 |
Q |
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| T |
40736182 |
gatgtaaccttgcaagtcctcgcaggtatacacacgccctaagctatatgtctgaagttttccttgagtacattttttgtaacccttttataactgagtt |
40736083 |
T |
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| Q |
209 |
ctacttcggtgtaaccggcccgtagctaatgagtatggctcatattcattgataagtatgcagatgcacaagcatagtggacctaaaatcgcaatgagca |
308 |
Q |
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| T |
40736082 |
ctacttcggtgtaaccggcccgtaactaatgagtatggctcatattcattgataagtatgcagatgcacaagcatagtggacctaaaattgcaatgagca |
40735983 |
T |
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| Q |
309 |
tagtggaaccctcaacactatgattttgggataaacttgtaatctggatcgtaatatttatacacaacttgactcaatggtcacgctattgtgagagaag |
408 |
Q |
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| T |
40735982 |
tagtggaaccctcaaaactatgatttagggataaacttgtaatctggatcgtaatatttaaacacaacttgactcaatggtcacgctattgtgagagaag |
40735883 |
T |
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| Q |
409 |
tatacacgattgaccgaaccttgtgatcaaatgctatgttcttgtacatttatttatctatttagagccaggttggctattctaagatttaccgtttcaa |
508 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40735882 |
tatacacgattgaccgaaccttatgatcaaatgctatgttcttgtacatttatttatctatttagagccagattggctattctaagatttaccgtttcaa |
40735783 |
T |
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| Q |
509 |
agttatattatgtatcaataatcctactactatataaaaggtaaccagaatttaatgcactaaattttttagaactataactatc |
593 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40735782 |
agttctattatgtatcaataatcctactactatataaaaggtaaccagaatttaatgcactaaattttttagaactataactatc |
40735698 |
T |
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