View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4724_low_5 (Length: 420)
Name: NF4724_low_5
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4724_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 31557030 - 31557426
Alignment:
| Q |
1 |
atcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgc |
100 |
Q |
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| T |
31557030 |
atcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgc |
31557129 |
T |
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| Q |
101 |
cccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcg |
200 |
Q |
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| T |
31557130 |
cccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcg |
31557229 |
T |
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| Q |
201 |
caccttcaatccatggagatggcaggtacatgattagnnnnnnnattattgctgatctaattaatgttatgttgagttacactgcactcttcagttgctt |
300 |
Q |
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| T |
31557230 |
caccttcaatccatggagatggcaggtacatgattag-ttttttattattgctgatctaattaatgttatgttgagttacactacactcttcagttgctt |
31557328 |
T |
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| Q |
301 |
ataacttgtgatcaaaatttatcagaataataactcagaagctgtagcaagccctgggagcatatttacaccatttggaggagggccaaggttgtgcc |
398 |
Q |
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| T |
31557329 |
ataacttgtgatcaaaatttatcagaataataactcagaagctgtagcaagccctgggagcatatttacaccatttggaggagggccaaggttgtgcc |
31557426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 35478967 - 35479046
Alignment:
| Q |
149 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
228 |
Q |
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| T |
35478967 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
35479046 |
T |
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