View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4724_low_6 (Length: 323)
Name: NF4724_low_6
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4724_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 26018824 - 26019120
Alignment:
| Q |
8 |
gagcagagatggaggcatacaacaaggttatgattgtgggcatattgttgatcattgccaataccatgttgttggttaatggtcagtcgttatgtcacat |
107 |
Q |
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| T |
26018824 |
gagcagagatggaggcatacaacaaggttatgattgtgggcatattgttgatcattgccaataccatgttgttggttaatggtcagtcgttatgtcacat |
26018923 |
T |
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| Q |
108 |
gacaaaacaaggactgaaggcatgcgcgccgtatgttagtggcgacaattcagttaatggtcaaaagccatctgatgtttgctgctcggctattgccaaa |
207 |
Q |
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| T |
26018924 |
gacaaaacaaggactgaaggcatgcgcgccgtatgttagtggtgacaattcagttaatggtcaaaagccatctgatgtttgctgctcggctattgccaaa |
26019023 |
T |
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| Q |
208 |
gccgatcttcaatgcctatgtcgttataaggattcaggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgta |
304 |
Q |
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| T |
26019024 |
gccgatcttcaatgcctatgtcgttataaggattcaggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgta |
26019120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 26002968 - 26003260
Alignment:
| Q |
12 |
agagatggaggcatacaacaaggttatgattgtgggcatattgttgatcattgccaataccatgttgttggttaatggtcagtcgttatgtcacatgaca |
111 |
Q |
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|||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||| |
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| T |
26002968 |
agagatggaggcatacaagaagattatgattgtggggatattgttgatcattgccaataccatgttgttgattgatggtcagtcattatgtcagatgaca |
26003067 |
T |
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| Q |
112 |
aaacaaggactgaaggcatgcgcgccgtatgttagtggcgacaattcagttaatggtcaaaagccatctgatgtttgctgctcggctattgccaaagccg |
211 |
Q |
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| T |
26003068 |
aacaaaggactgaaggcatgtgagccatatgtgagtggtgtcaaaattgctgcttttcaaattccaagtgatgcttgctgccatgctactgccaaggctg |
26003167 |
T |
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| Q |
212 |
atcttcaatgcctatgtcgttataaggattcaggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgta |
304 |
Q |
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||||| |||| || ||| |||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||| || || ||||| |||| |
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| T |
26003168 |
atcttgaatgtctttgtagttacaaggattcagggttgctttctttctatggtattgatccagatcaagccatggatctcccagttaagtgta |
26003260 |
T |
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