View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4724_low_7 (Length: 318)
Name: NF4724_low_7
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4724_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 18628141 - 18628458
Alignment:
| Q |
1 |
tttcaagggatgtaactttttaacatattttaaaacatttttacatttgtttactgaggaatatgaacaatgcataatgtgatgtaaagaatatgcatac |
100 |
Q |
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| T |
18628141 |
tttcaagggatgtatctttttaacatattttaaagcatttttacatttgtttactgaggaatatgaacaatgcataatgtgatgtaaagaatatgcatac |
18628240 |
T |
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| Q |
101 |
cgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatattagc |
200 |
Q |
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| T |
18628241 |
cgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatattagc |
18628340 |
T |
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| Q |
201 |
atgtctaatcctcccaaactgtctcatctcagcatcaaacacatctttcccaattttattcatctccctcattctcttcaccaccaccctcaagccggtc |
300 |
Q |
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| T |
18628341 |
atgtctaatcctcccaaactgtctcatctcagcatcaaacacatctttcccaattttattcatctccctcattctcttcaccaccacactcaatccggtc |
18628440 |
T |
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| Q |
301 |
gccatcgcggccttataa |
318 |
Q |
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| T |
18628441 |
gccatcgcggccttataa |
18628458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 98 - 287
Target Start/End: Complemental strand, 51845888 - 51845699
Alignment:
| Q |
98 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
197 |
Q |
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|||| |||||||||||||||||||||||||||||| | || ||||||||||| | ||| ||||| | || ||||| ||||||||||||| ||||||||| |
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| T |
51845888 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
51845789 |
T |
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| Q |
198 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaacacatctttcccaattttattcatctccctcattctcttcaccaccac |
287 |
Q |
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| T |
51845788 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctccctcatcctcttcacaaccac |
51845699 |
T |
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