View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4725-Insertion-1 (Length: 1001)

Name: NF4725-Insertion-1
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4725-Insertion-1
NF4725-Insertion-1
[»] chr3 (7 HSPs)
chr3 (7-1001)||(7033041-7034032)
chr3 (7-324)||(7029638-7029967)
chr3 (269-383)||(777696-777810)
chr3 (268-394)||(476509-476635)
chr3 (638-842)||(7058691-7058898)
chr3 (268-383)||(481453-481568)
chr3 (556-606)||(13492181-13492231)
[»] chr2 (4 HSPs)
chr2 (265-396)||(43874719-43874850)
chr2 (265-396)||(38989579-38989710)
chr2 (268-381)||(43867038-43867151)
chr2 (265-381)||(43863560-43863676)
[»] chr4 (3 HSPs)
chr4 (265-395)||(52187294-52187424)
chr4 (209-258)||(52187461-52187510)
chr4 (209-250)||(36629937-36629978)
[»] chr6 (7 HSPs)
chr6 (759-855)||(7115543-7115639)
chr6 (759-855)||(7120615-7120711)
chr6 (759-855)||(7124019-7124115)
chr6 (759-847)||(7140733-7140821)
chr6 (759-847)||(8680347-8680435)
chr6 (760-852)||(8656649-8656741)
chr6 (482-532)||(7175106-7175156)
[»] chr7 (2 HSPs)
chr7 (736-876)||(6889111-6889250)
chr7 (576-617)||(32413847-32413888)
[»] chr5 (3 HSPs)
chr5 (638-709)||(25064385-25064456)
chr5 (638-705)||(25216079-25216146)
chr5 (638-705)||(25280231-25280298)
[»] chr1 (1 HSPs)
chr1 (760-855)||(14288894-14288989)
[»] chr8 (4 HSPs)
chr8 (659-705)||(27701803-27701849)
chr8 (268-317)||(26291484-26291533)
chr8 (268-317)||(26304741-26304790)
chr8 (268-317)||(26338096-26338145)
[»] scaffold0438 (1 HSPs)
scaffold0438 (268-317)||(5865-5914)


Alignment Details
Target: chr3 (Bit Score: 919; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 919; E-Value: 0
Query Start/End: Original strand, 7 - 1001
Target Start/End: Complemental strand, 7034032 - 7033041
Alignment:
Q  7 aaaccaaacatgcctataaagtcccttgagggcatctaaagagacagtcaatgattcgatcccagcaaactcagacagccatctaagtagagccgatgaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7034032 aaaccaaacatgcctataaagtaccttgagggcatctaaagagacagtcaatgattcgatcccagcaaactcagacagccagctaagtagagccgatgaa 7033933  T
Q  107 gtcttcgcccattcccaatcacttgctaaatcaatatttacatgcttgatagtagagaggttgctcttgctcccatagatcttattcagaatagtgcaac 206  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7033932 gtcttcgccgattcccaaacacttggtaaatcaatatttacatgcttgatagtagagaggttgctcttgctcccatagatcttattcggaatagtgcaac 7033833  T
Q  207 cagtaaaagtaaaggtatgaagacttggaacagatagctcaattccgaaataactctgaagtatagttaaactaacaagcttgggacttgatatgcaaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033832 cagtaaaagtaaaggtatgaagacttggaacagatagctcaattccgaaataactctgaagtatagttaaactaacaagcttgggacttgatatgcaaag 7033733  T
Q  307 gttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaatttggaaaagggctcgacacgaccatcatcactattatgaaag 406  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033732 gttttgtgcatcacaaaccatacaactatcaatgatcaaactatttaacattttaaatttggaaaagggctcgacacgaccatcatcactattatgaaag 7033633  T
Q  407 acaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaagtttaagagaagttaaagtgt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033632 acaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaagtttaagagaagttaaagtgt 7033533  T
Q  507 tacatgaaaagaagcatggaggaaagcgttgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaacagcatattttacaatcttttt 606  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033532 tacatgaaaagaagcatggaggaaagcattgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaacagcatattttacaatcttttt 7033433  T
Q  607 tagtaggtaagcctccacaatactcgcgcgatgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtg 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033432 tagtaggtaagcctccacaatactcgcgcgatgagaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtg 7033333  T
Q  707 aaaggatggatagtctcaaagtgtctagtacttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtactg 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7033332 aaaggatggatagtctcaaagtgtctagtacttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtgctg 7033233  T
Q  807 cctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaaggtcactgaggcgatcttgtttcacatcatcggttatattttcgtttt 906  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||    
T  7033232 cctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaa-gtcactgaggcgatcttgtttcacatcatc-gttatattttcg-ttt 7033136  T
Q  907 cattgtctcggaaatgattctgacctgtgagttagaagcaatttcaaatgggcttaattagggttaccgagaaattgaaggtaattcaaaactaa 1001  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  7033135 cattgtctcggaaatgattctgacctgtgagttagaagcaatttcaaatgggcttaattagggttacagagaaattgaaggtaatcaaaaactaa 7033041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 7029967 - 7029638
Alignment:
Q  7 aaaccaaacatgcctataaagtcccttgagggcatctaaagagacagtcaatgattcgatcccagcaaactcagacagccatctaagtagagccgatgaa 106  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||  |||||||||| || | |||||| |||  |||||| || |||||| || |||||    
T  7029967 aaaccaaacatgccaataaagtaccttgagggcctctaaagagacgatcaatgattcaatactagcaaattcaaccagccagctgagtagaaccaatgaa 7029868  T
Q  107 gtcttcgcccattcccaatcacttgctaaatcaatatttacatgcttgatagtagagaggttgctcttgctcccatagatcttattcagaatagtgcaac 206  Q
    ||||| ||| | ||||||  |  |||||||| |||| ||||||| ||||||| ||| || ||| ||||||||||||||| |   |||  || ||| | ||    
T  7029867 gtctttgccgaatcccaaagatgtgctaaattaatacttacatgtttgatagaagaaagattggtcttgctcccatagaac---ttcgtaagagtacgac 7029771  T
Q  207 cagtaaaagtaaaggtatgaagacttggaacagatagctcaattccgaaat---------------aactctgaagtatagttaaactaacaagcttggg 291  Q
      || |||| ||||||||||| ||||||| |||| ||||||||||| ||||               ||| |  ||||| | ||||| |||||||||||||    
T  7029770 tggtgaaagcaaaggtatgaatacttggagcagagagctcaattccaaaatatttattaagacaaaaacccataagtaaacttaaattaacaagcttggg 7029671  T
Q  292 acttgatatgcaaaggttttgtgcatcacgaac 324  Q
    |||||||||||||||||||||||||||||||||    
T  7029670 acttgatatgcaaaggttttgtgcatcacgaac 7029638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 269 - 383
Target Start/End: Original strand, 777696 - 777810
Alignment:
Q  269 atagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaatttgg 368  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||||||   ||| ||||||| |||||||||||||||||| |||||||||||| | |    
T  777696 atagtaaaactaacaagtttggtacttgatatgcaaaggttttgtgcatccataactatacaacaatcaatgatcaaactattcaacattttaaatgttg 777795  T
Q  369 aaaagggctcgacac 383  Q
    |||| ||||||||||    
T  777796 aaaatggctcgacac 777810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 394
Target Start/End: Complemental strand, 476635 - 476509
Alignment:
Q  268 tatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaatttg 367  Q
    |||||||||| | | |||||||| |||||| |||| |||||||||||||||  |||  | |||    |||||||||||| |||| ||||| |||||| ||    
T  476635 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaattacacataagtcaatgatcaaagtattcaacatgttaaatgtg 476536  T
Q  368 gaaaagggctcgacacgaccatcatca 394  Q
    |||||||| ||||| | ||||||||||    
T  476535 gaaaaggggtcgacgcaaccatcatca 476509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 842
Target Start/End: Original strand, 7058691 - 7058898
Alignment:
Q  638 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtgaaaggat--gga-tagtctcaaagtgtctag 734  Q
    ||||||||||| |  || ||||| |||||||||| |||| ||||||| |  |||||||||||||||||||||   |  ||| |  ||| ||||||||||     
T  7058691 tgaaaatcaagtgtgtgaagtgctgttgagtcattgcgaagagacaatatctgagacacaaatttggtgaaacccttgggattcttcttaaagtgtctaa 7058790  T
Q  735 tacttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaat 834  Q
     | ||||||||||| | | || | | ||||| | ||||||||||  |||||| || ||||||||||| || |||||||| | ||  ||||| ||||||||    
T  7058791 aagttaatttaaggatgggaagatatttccagagattcttccatgatttggagagaatacaagtttggaccgcctctttagggtccaaaaaggagagaat 7058890  T
Q  835 gtgaagta 842  Q
    ||||||||    
T  7058891 gtgaagta 7058898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 268 - 383
Target Start/End: Complemental strand, 481568 - 481453
Alignment:
Q  268 tatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaatttg 367  Q
    |||||||||||| | |||||||| |||||| |||||||||||| |||||||  |||  | ||| |  |||||||||||| |||  ||||| ||||||  |    
T  481568 tatagttaaactgagaagcttggtacttgaaatgcaaaggtttcgtgcatccagaagtacacagcagtcaatgatcaaagtatccaacatgttaaatgcg 481469  T
Q  368 gaaaagggctcgacac 383  Q
    |||||||| |||||||    
T  481468 gaaaaggggtcgacac 481453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 556 - 606
Target Start/End: Complemental strand, 13492231 - 13492181
Alignment:
Q  556 gatttgtaactgttggacactgtgtgaaacagcatattttacaatcttttt 606  Q
    ||||||||||||||||||| |||| ||||| |||||||||| |||| ||||    
T  13492231 gatttgtaactgttggacattgtgcgaaactgcatattttaaaatcctttt 13492181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 265 - 396
Target Start/End: Original strand, 43874719 - 43874850
Alignment:
Q  265 aagtatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaat 364  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||||||||||  |||| | |||||| ||||||||||||| ||| ||||| ||||||    
T  43874719 aagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaat 43874818  T
Q  365 ttggaaaagggctcgacacgaccatcatcact 396  Q
     | ||||||||||||||||  |||||||||||    
T  43874819 gttgaaaagggctcgacacagccatcatcact 43874850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 265 - 396
Target Start/End: Complemental strand, 38989710 - 38989579
Alignment:
Q  265 aagtatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaat 364  Q
    ||||||| ||||| | |||||||||| ||||||||||||||| |||||||| ||  |||| |||||||  ||||||||||||||||| ||||||||||||    
T  38989710 aagtatacttaaattgacaagcttggtacttgatatgcaaagattttgtgcgtccagaactatacaacagtcaatgatcaaactattcaacattttaaat 38989611  T
Q  365 ttggaaaagggctcgacacgaccatcatcact 396  Q
     ||||||||||||| |||| ||||| ||||||    
T  38989610 gtggaaaagggctcaacacaaccattatcact 38989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 43867038 - 43867151
Alignment:
Q  268 tatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaatttg 367  Q
    |||||||||| | |||||||||| |||||||||||||||||||||||||||  |||| |||||||| ||||||||||||| ||| ||||| |||||| |     
T  43867038 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgattcaacatgttaaatgtc 43867137  T
Q  368 gaaaagggctcgac 381  Q
    ||||||||||||||    
T  43867138 gaaaagggctcgac 43867151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 43863560 - 43863676
Alignment:
Q  265 aagtatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaat 364  Q
    ||||||||||||| | |||||| ||| |||||||||||||||||||||||||||  |||| |||||||| ||||||||||||| ||  ||||| ||| ||    
T  43863560 aagtatagttaaattgacaagcctggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgatccaacatgttatat 43863659  T
Q  365 ttggaaaagggctcgac 381  Q
     | || |||||||||||    
T  43863660 gtcgagaagggctcgac 43863676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 265 - 395
Target Start/End: Complemental strand, 52187424 - 52187294
Alignment:
Q  265 aagtatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacgaaccatacaactatcaatgatcaaactatttaacattttaaat 364  Q
    ||||||| ||||| | ||||| |||| ||||||||||||||| |||||||| ||  |||| |||||||  ||||||| |||||| || |||||||||||     
T  52187424 aagtatacttaaattgacaagtttggcacttgatatgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaac 52187325  T
Q  365 ttggaaaagggctcgacacgaccatcatcac 395  Q
     |||||||||||||||||| |||||||||||    
T  52187324 gtggaaaagggctcgacacaaccatcatcac 52187294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 52187510 - 52187461
Alignment:
Q  209 gtaaaagtaaaggtatgaagacttggaacagatagctcaattccgaaata 258  Q
    ||||||| ||||||||||||||||||| || ||||||||||||| |||||    
T  52187510 gtaaaagcaaaggtatgaagacttggagcatatagctcaattccaaaata 52187461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 36629978 - 36629937
Alignment:
Q  209 gtaaaagtaaaggtatgaagacttggaacagatagctcaatt 250  Q
    |||||||| ||||||  |||||||||||||||||||||||||    
T  36629978 gtaaaagtgaaggtacaaagacttggaacagatagctcaatt 36629937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 759 - 855
Target Start/End: Original strand, 7115543 - 7115639
Alignment:
Q  759 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcagg 855  Q
    ||||||| | |||||||||||||||||| |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| |||||||    
T  7115543 acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcagg 7115639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 759 - 855
Target Start/End: Original strand, 7120615 - 7120711
Alignment:
Q  759 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcagg 855  Q
    ||||||| | |||||||||||||||||| |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| |||||||    
T  7120615 acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcagg 7120711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 759 - 855
Target Start/End: Original strand, 7124019 - 7124115
Alignment:
Q  759 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcagg 855  Q
    ||||||| | |||||||||||||||||| |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| |||||||    
T  7124019 acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcagg 7124115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 847
Target Start/End: Original strand, 7140733 - 7140821
Alignment:
Q  759 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaaca 847  Q
    ||||||||| |||||||||||||||||| |  ||||||||||| ||||| | ||| || || ||||| ||||| |||||||||| ||||    
T  7140733 acttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaaca 7140821  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 847
Target Start/End: Original strand, 8680347 - 8680435
Alignment:
Q  759 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaaca 847  Q
    ||||||||| |||||||||||||||||| |  ||||||||||| ||||| | ||| || || ||||| ||||| |||||||||| ||||    
T  8680347 acttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaaca 8680435  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 760 - 852
Target Start/End: Original strand, 8656649 - 8656741
Alignment:
Q  760 cttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatc 852  Q
    |||||| | |||||||||||||||||  |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||    
T  8656649 cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatc 8656741  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 482 - 532
Target Start/End: Original strand, 7175106 - 7175156
Alignment:
Q  482 gaaagtttaagagaagttaaagtgttacatgaaaagaagcatggaggaaag 532  Q
    ||||| |||||||| |||||||||| |||||||||||||| ||| ||||||    
T  7175106 gaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggcggaaag 7175156  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 736 - 876
Target Start/End: Complemental strand, 6889250 - 6889111
Alignment:
Q  736 acttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatg 835  Q
    ||||||| ||||||||| || | | ||||| | ||| |||||||||||||| || || |||||||| || || ||| ||||||  ||||| ||||| |||    
T  6889250 acttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatg 6889151  T
Q  836 tgaagtacaacagaatcaggcaaggtcactgaggcgatctt 876  Q
    ||||| | |||| |||| || || |||||||||||||||||    
T  6889150 tgaagaataacacaatcgggtaa-gtcactgaggcgatctt 6889111  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 576 - 617
Target Start/End: Complemental strand, 32413888 - 32413847
Alignment:
Q  576 tgtgtgaaacagcatattttacaatcttttttagtaggtaag 617  Q
    |||| |||||||||||||||||||| ||||| ||||||||||    
T  32413888 tgtgcgaaacagcatattttacaatttttttgagtaggtaag 32413847  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 638 - 709
Target Start/End: Complemental strand, 25064456 - 25064385
Alignment:
Q  638 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtgaaa 709  Q
    |||||||| |||||  |||||| ||| | |||||||||| |||| ||||| |||||||||||||||||||||    
T  25064456 tgaaaatcgagggcaagcagtgaggtagtgtcatcgcgaagagagaaaacgtgagacacaaatttggtgaaa 25064385  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 705
Target Start/End: Complemental strand, 25216146 - 25216079
Alignment:
Q  638 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt 705  Q
    |||||||| |||||  |||||| ||| | ||||| |||| |||||||||||||||| |||||||||||    
T  25216146 tgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggt 25216079  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 705
Target Start/End: Complemental strand, 25280298 - 25280231
Alignment:
Q  638 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt 705  Q
    |||||||| |||||  |||||| ||| | ||||| |||| |||||||||||||||| |||||||||||    
T  25280298 tgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggt 25280231  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 855
Target Start/End: Original strand, 14288894 - 14288989
Alignment:
Q  760 cttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcagg 855  Q
    |||||| | |||||||||||||||||| ||||| |||||||| || || | |||||| || ||||| || | ||||||||||| |||  |||||||    
T  14288894 cttccagagattcttccatcttttggagagtatgcaagtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcagg 14288989  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 659 - 705
Target Start/End: Original strand, 27701803 - 27701849
Alignment:
Q  659 gcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt 705  Q
    |||||||||||||||||| ||||||||||  ||||||| ||||||||    
T  27701803 gcggttgagtcatcgcgaagagacaaaacccgagacacgaatttggt 27701849  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 26291533 - 26291484
Alignment:
Q  268 tatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcat 317  Q
    |||||||||| | |||||||||| |||||| |||| ||||||||||||||    
T  26291533 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcat 26291484  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 26304790 - 26304741
Alignment:
Q  268 tatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcat 317  Q
    |||||||||| | |||||||||| |||||| |||| ||||||||||||||    
T  26304790 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcat 26304741  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 26338145 - 26338096
Alignment:
Q  268 tatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcat 317  Q
    |||||||||| | |||||||||| |||||| |||| ||||||||||||||    
T  26338145 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcat 26338096  T

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Target: scaffold0438 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 5914 - 5865
Alignment:
Q  268 tatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcat 317  Q
    |||||||||| | |||||||||| |||||| |||| ||||||||||||||    
T  5914 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcat 5865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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