View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725-Insertion-4 (Length: 885)
Name: NF4725-Insertion-4
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 745; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 5 - 885
Target Start/End: Original strand, 32897598 - 32898468
Alignment:
| Q |
5 |
acaaatagagcaacagaagctggttattggaaagcaactgggaaagatagagagatttatagctcaaaaacttactctcttgttggtatgaagaaaaccc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32897598 |
acaaatagagcaacagaagctggttattggaaagcaactgggaaagatagagagatttatagctcaaaaacttactctcttgttggtatgaagaaaaccc |
32897697 |
T |
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| Q |
105 |
ttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaatatcgccttgaaggaaaatttgcttatcacttcctctctag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32897698 |
ttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaatatcgccttgaaggaaaatttgcttatcacttcctctctag |
32897797 |
T |
|
| Q |
205 |
aaactctaaggtactaatttttctttcatttcttcatcatagctattttaatttagtgaatttcaagtgttctcaagtgctttgtagtgtagcactttgt |
304 |
Q |
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| T |
32897798 |
aaactctaaggtactaatttttctttcatttcttcatcatagctattttaatttagtgaatttcaagtgtt----------ttgtagtgtagtactttgt |
32897887 |
T |
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| Q |
305 |
tgtaattgtttgcatatgagccgcattttgatcctttcaaaagactatgagagataggtggaatcttgtttttcttaataggcttgtatatgcattggtt |
404 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32897888 |
tgtaattatttgtatatgagccgcattttgatcctttcaaaagactatgagagataggtggaatcttgttttgcttaataggcttgtatatgcattggtt |
32897987 |
T |
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| Q |
405 |
tcatttatcaatgttgatgatttatctcgattaggattttttgtactttttgagatgaatgattactgcagagaattaatcaatcttgacacatcattta |
504 |
Q |
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| T |
32897988 |
tcatttatcaatgttgatgatttatctcgattaggattttttgtactttttgagatgaatgattactgcagagaattaatcaatcttgacacatcattta |
32898087 |
T |
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| Q |
505 |
catgttaatggttattaccctatggtgcatgtaagagtttcttatcacacttttgtgaatacatgagtttgcatgggaaccataaccattcacatcaatt |
604 |
Q |
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| T |
32898088 |
catgttaatggttattaccctatggtgcatgtaagagtttcctatcacacttttgtgaatacatgagtttgcatgggaaccataaccattcacattcatt |
32898187 |
T |
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| Q |
605 |
tttcaaaaactgttttgcttatgctaaaaactagtatgtacgtatatcactgctattttcaccacagttttcattttgcatagggtttagtttatcatca |
704 |
Q |
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| T |
32898188 |
tttcaaaaactattttgcttatgcttaaaactagtatgtacgtatatcactgccattttcaccacagttttcattttgcatagggtttagtttatcatca |
32898287 |
T |
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| Q |
705 |
tcaattatcattaactaccttcaaaatattaatgcttccatgttcagctttttctaccaaaaatctcactttataaacagttacataataagttaataac |
804 |
Q |
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| T |
32898288 |
tcaattatcattaactacctacaaaatattaatgcttccatgttcagctttttctacc-aaaatctcactttataaacagttacataataagttaataac |
32898386 |
T |
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| Q |
805 |
atgcttttggaattttgttttc---attataactaattcttccatctannnnnnngaacttatgaaggatgaatgggtcatttc |
885 |
Q |
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| T |
32898387 |
atgctttt-gaattttgttttcattattataactaattcttacatcta-ttttttgaacttatgaaggatgaatgggtcatttc |
32898468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 45058922 - 45059094
Alignment:
| Q |
5 |
acaaatagagcaacagaagctggttattggaaagcaactgggaaagatagagagatttatagctcaaaaacttactctcttgttggtatgaagaaaaccc |
104 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| | || | ||||||||||||||||| | |
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| T |
45058922 |
acaaacagagcaacagaagcaggttattggaaagcaactgggaaagataaagaaattt-----tcaaagggaaa-tcgttggttggtatgaagaaaactc |
45059015 |
T |
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| Q |
105 |
ttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaatatcgccttgaaggaaaatt |
183 |
Q |
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| T |
45059016 |
ttgttttctacaaaggaagagcacctaaaggagaaaaaagtaattgggtcatgcatgaatatcgacttgagggtaaatt |
45059094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 11462991 - 11462890
Alignment:
| Q |
82 |
tcttgttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaatatcgccttgaaggaaaa |
181 |
Q |
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||||||||| ||||||||||| ||||||||||| | ||||||||| |||||||| || |||||||| ||||| |||||||||||| | ||||| || ||| |
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| T |
11462991 |
tcttgttggaatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagagaaaagtaattgggtaatgcatgaatatagacttgagggtaaa |
11462892 |
T |
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| Q |
182 |
tt |
183 |
Q |
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|| |
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| T |
11462891 |
tt |
11462890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 3893374 - 3893451
Alignment:
| Q |
87 |
ttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaat |
164 |
Q |
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|||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
3893374 |
ttggaatgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaat |
3893451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 10317779 - 10317623
Alignment:
| Q |
8 |
aatagagcaacagaagctggttattggaaagcaactgggaaagatagagagatttatagctcaaaaacttactctcttgttggtatgaagaaaacccttg |
107 |
Q |
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||||||||||| ||| | || ||||||||||||||||| ||||||| |||||| || | |||| | || |||||||||||||||||||| |||| |
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| T |
10317779 |
aatagagcaactgaatcaggctattggaaagcaactggaaaagataaagagatctacaaagggaaaagtaaccaacttgttggtatgaagaaaactcttg |
10317680 |
T |
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| Q |
108 |
ttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaat |
164 |
Q |
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| ||||||| ||| |||||||| | ||| || |||| || ||||| |||||||||| |
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| T |
10317679 |
tgttctataaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
10317623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 32991200 - 32991281
Alignment:
| Q |
83 |
cttgttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaat |
164 |
Q |
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| T |
32991200 |
cttgttggtatgaagaagactcttgtgttctataaaggaagagctccaaaaggagagaagactaattgggttatgcatgaat |
32991281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 2919446 - 2919524
Alignment:
| Q |
87 |
ttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaata |
165 |
Q |
| |
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|||| ||||| ||||| || |||||||| | |||||||||||| | |||||||||| |||||||| ||||||||||| |
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| T |
2919446 |
ttgggatgaaaaaaacactagttttctacataggaagagctccgagaggtgaaaaatccaactgggtcatgcatgaata |
2919524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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