View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725-Insertion-6 (Length: 667)
Name: NF4725-Insertion-6
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 8 - 648
Target Start/End: Complemental strand, 18513288 - 18512670
Alignment:
| Q |
8 |
attccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaaccatctctcgtagctgtatatagag |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18513288 |
attccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaaccatctcttgtagctgtatatagaa |
18513189 |
T |
|
| Q |
108 |
caccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctatcatgttatggaaacattaatagacaatta |
207 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| |
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| T |
18513188 |
caccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgttatggaaacattaatagataatta |
18513089 |
T |
|
| Q |
208 |
aatacatatgatattgaacaatatagctatagttaaattatgtaacaaatgttgataaaattttcacctgtaattggttgtttttggttgaagaagttga |
307 |
Q |
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||||||||| || ||||| | ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
18513088 |
aatacatattattttgaaaa--------------------tgtggcaaatattgataaaatattcacctgtaattggttgtttttggttgaagaaggtga |
18513009 |
T |
|
| Q |
308 |
agatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgag |
407 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18513008 |
agatgcagaagaaggaatttctagtataactggatctatcggtgagaagtagaagacttgaactgtgagagcaactaaagatgctagcaccaagcttgag |
18512909 |
T |
|
| Q |
408 |
gtcagtgtgacacaatatttaccaagggtggaaggagtattggttatattggaagccatgctttacaagctgtgtgctttgcatatagtagaattttatt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18512908 |
gtcagtgtgacacaatatttaccaagggtggaaggaggattggttatattggaagccatgctttacaagctgtgtgctttgcatatagtggaattttatt |
18512809 |
T |
|
| Q |
508 |
atcacatttttatggaattgttttgatttaggtatgtgttgacatctgtttccttttctggactgaaaagttatccgagggttcggctaatagcttctca |
607 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18512808 |
atcacatttttatggaactgttttgatttaggtatgtgttgacatctgtttccttttctggactgaaaagttatccgagggttcggctaatagc-tctca |
18512710 |
T |
|
| Q |
608 |
accgtgattttcattttgcttcaaataattacgccaagaaa |
648 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18512709 |
accgtga-tttcattttgcttcaaataattacgccaagaaa |
18512670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 18486939 - 18486558
Alignment:
| Q |
8 |
attccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaaccatctctcgtagctgtatatagag |
107 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| | |
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| T |
18486939 |
attccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattcttttaatccaaccatctcttgttgctgtatataaaa |
18486840 |
T |
|
| Q |
108 |
caccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctatcatgttatggaaacattaatagacaatta |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
18486839 |
taccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgttatggaaacattaatagacaatta |
18486740 |
T |
|
| Q |
208 |
aatacatatgatattgaacaatatagctatagttaaattatgtaacaaatgttgataaaattttcacctgtaattggttgtttttggttgaagaagttga |
307 |
Q |
| |
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| T |
18486739 |
aatacatattattttgaa--------------------aatgtgacaaatattgataaaatattcacctgtaattggttgtttttggttgaagaagttga |
18486660 |
T |
|
| Q |
308 |
agatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgag |
407 |
Q |
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| T |
18486659 |
agatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgag |
18486560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 18506790 - 18506620
Alignment:
| Q |
8 |
attccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaaccatctctcgtagctgtatatagag |
107 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18506790 |
attccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaaccatctcttgtagctgtatatagaa |
18506691 |
T |
|
| Q |
108 |
caccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctat |
178 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
18506690 |
caccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacactctat |
18506620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 18506457 - 18506378
Alignment:
| Q |
335 |
aactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggtcagtg |
414 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
18506457 |
aactggatctatgggtgaaaagtagaagacttgaactgtgagagcaactaaagctgctagtaccaagcttgaggttagtg |
18506378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 18506515 - 18506482
Alignment:
| Q |
268 |
ttttcacctgtaattggttgtttttggttgaaga |
301 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
18506515 |
ttttcacctgtaattggttgtttttggttgaaga |
18506482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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