View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725_low_1 (Length: 631)
Name: NF4725_low_1
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 34133636 - 34133152
Alignment:
| Q |
1 |
tctccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133636 |
tctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaagga |
34133537 |
T |
|
| Q |
101 |
gattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133536 |
gattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttc |
34133437 |
T |
|
| Q |
201 |
tttgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaatgttagagactgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133436 |
tttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggttattatgatacagagcataccaaaaatgttagagactgga |
34133337 |
T |
|
| Q |
301 |
aagaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctgatgaacatgatgatggtgttattcaatggactaatcaatcacctca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133336 |
aagaagtgtttgattttctttctcaagatcctacattagttcctcggagttctgatgaacatgatgatggtgttattcaatggactaatcaatcacctca |
34133237 |
T |
|
| Q |
401 |
atatcctccacaattcaggtagttgattcatactaatatattattcattgattgttgaaagtctcatgttgggttgtgttgatag |
485 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34133236 |
atatcctccacaattcaggtagttgattcatactaatatattattcattgatcgttgaaagtctcatgttgggttgtgttgatag |
34133152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 34137547 - 34137124
Alignment:
| Q |
1 |
tctccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaagga |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||| ||||||||||| | ||| ||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
34137547 |
tctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaagga |
34137448 |
T |
|
| Q |
101 |
gattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttc |
200 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||| ||| ||||||| |
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|
| T |
34137447 |
aattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttc |
34137348 |
T |
|
| Q |
201 |
tttgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaatgttagagactgga |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||| ||||||| |
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|
| T |
34137347 |
tttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactgga |
34137248 |
T |
|
| Q |
301 |
aagaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctgatgaacatgatgatggtgttattcaatggactaatcaatcacctca |
400 |
Q |
| |
|
|||||||| |||||||||| | | ||||| ||||| ||||||| | |||||||||| | |||||| ||||||||||| |||||| ||| || || |
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|
| T |
34137247 |
aagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaatttattcaatggtctaatccatccccaca |
34137148 |
T |
|
| Q |
401 |
atatcctccacaattcaggtagtt |
424 |
Q |
| |
|
|| ||| |||| ||||||||||| |
|
|
| T |
34137147 |
attcccttcacacttcaggtagtt |
34137124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 34141210 - 34140894
Alignment:
| Q |
1 |
tctccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaagga |
100 |
Q |
| |
|
||||| |||| ||||||||||| ||||| |||||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||| ||| || ||||| |
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|
| T |
34141210 |
tctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagcttagtcaagga |
34141111 |
T |
|
| Q |
101 |
gattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttc |
200 |
Q |
| |
|
||||||||||||| |||| | |||||| |||||| ||||||||||||| ||||||||||||||||| |||||||| ||||| |||||| ||||||||||| |
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|
| T |
34141110 |
gattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgttc |
34141011 |
T |
|
| Q |
201 |
tttgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaatgttagagactgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || || | ||||| |||||||||||| || |
|
|
| T |
34141010 |
tttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggttattatgacactgaactcaccaagaatgttagagacatga |
34140911 |
T |
|
| Q |
301 |
aagaagtgtttgatttt |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34140910 |
aagaagtgtttgatttt |
34140894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 3 - 422
Target Start/End: Complemental strand, 34127361 - 34126942
Alignment:
| Q |
3 |
tccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaaggaga |
102 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| ||||| ||||| | ||||||| ||||| | ||| ||||| |||||| | |||||||||| ||| |
|
|
| T |
34127361 |
tccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagcttggtgaagaaga |
34127262 |
T |
|
| Q |
103 |
ttggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttctt |
202 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||||| |||||||| | |||||||||||| | ||||| |||||||| |||||| ||||||||||||| |
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|
| T |
34127261 |
ttggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgttctt |
34127162 |
T |
|
| Q |
203 |
tgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaatgttagagactggaaa |
302 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||| ||||||||||||| || | |||||||| ||||| |||||| ||||| ||||| ||| |||||| | |
|
|
| T |
34127161 |
tgctcaaagtttggaggagaaaatgaaggttgccagagatgagatcacaccaattggttattttgataaagagcacaccaagaatgtaagaaactggata |
34127062 |
T |
|
| Q |
303 |
gaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctgatgaacatgatgatggtgttattcaatggactaatcaatcacctcaat |
402 |
Q |
| |
|
||||||||||||||| | | |||||| ||||| ||||||| | || ||||||| |||||||| |||||||||||| |||||| || ||| | | |
|
|
| T |
34127061 |
gaagtgtttgattttttcgccagagatcccactttggttcctctgaattgtgatgaaaatgatgatcaagttattcaatggtctaatccgtcccctaagt |
34126962 |
T |
|
| Q |
403 |
atcctccacaattcaggtag |
422 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
34126961 |
atcctccaaaattcaggtag |
34126942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 478 - 613
Target Start/End: Complemental strand, 34132035 - 34131900
Alignment:
| Q |
478 |
gttgatagtaaataattatgtccagtagttaggacttgggaatttgttgcaattgatctctataaatatgacagttatgtatgaattagatagaagttaa |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34132035 |
gttgatagtaaataattatgtccagtagttaggacttaggaatttgttgcaattgatctctataaatatgacagttatgtatgaattagatagaagttaa |
34131936 |
T |
|
| Q |
578 |
cagattggacgttatagacccaaaatttgttcataa |
613 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34131935 |
cagattggacgtgatagacccaaaatttgttcataa |
34131900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 256 - 417
Target Start/End: Complemental strand, 34143438 - 34143277
Alignment:
| Q |
256 |
ctggttattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctga |
355 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| | || |||||||| ||||||| | |||||| |
|
|
| T |
34143438 |
ctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctga |
34143339 |
T |
|
| Q |
356 |
tgaacatgatgatggtgttattcaatggactaatcaatcacctcaatatcctccacaattca |
417 |
Q |
| |
|
|||||| |||||| || | | | |||||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
34143338 |
tgaacacgatgatcaagtcacttactggactaatccatcccctcaataccctccacacttca |
34143277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 12324064 - 12324008
Alignment:
| Q |
261 |
tattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgatttt |
317 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12324064 |
tattatgaaactgagcatactaagaatgttagagattggaaggaagtgtttgatttt |
12324008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 12375217 - 12375161
Alignment:
| Q |
261 |
tattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgatttt |
317 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12375217 |
tattatgaaactgagcatactaagaatgttagagattggaaggaagtgtttgatttt |
12375161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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