View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725_low_10 (Length: 239)
Name: NF4725_low_10
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37019891 - 37020113
Alignment:
| Q |
1 |
agaaattcctccatctttctccagtccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacatttgaatta |
100 |
Q |
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| T |
37019891 |
agaaattcctccatctttttccagtccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacatttgaatta |
37019990 |
T |
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| Q |
101 |
tctgcaacaacatagaaacatatataaatagtgtcaatttgtgtcttaaaaaatactcaacaaatccatggtnnnnnnngtaattattgcttacttgcaa |
200 |
Q |
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| T |
37019991 |
tctgcaccaacatagaaacatatataaatagtgtcaatttgtgtcttaaaaaatactcaacaaatccatggtaaaaaaagtaattattgcttacttgcaa |
37020090 |
T |
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| Q |
201 |
tctttgatgcctcttcatcttca |
223 |
Q |
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| T |
37020091 |
tctttgatgcctcttcatcttca |
37020113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 31054409 - 31054490
Alignment:
| Q |
25 |
tccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacatttgaattatctgca |
106 |
Q |
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| T |
31054409 |
tccaagaaattcccatgaacgtgtagtgtgtaatttatgctctttgctcaagaacacagacaccacctttggattttctgca |
31054490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 31198046 - 31197974
Alignment:
| Q |
22 |
cagtccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacattt |
94 |
Q |
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| T |
31198046 |
cagtccaagaaattcccatgaccgggtagtgtgcagtttatgaggtttgctcaagaacacagacactacattt |
31197974 |
T |
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