View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725_low_2 (Length: 575)
Name: NF4725_low_2
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 43764099 - 43763965
Alignment:
| Q |
19 |
cggacatccagacggaggttcggtagagtctgatttcgaaatcggattcagtgtggacgacggtgtactgtggggattcggtcgcggttgtgttgcggat |
118 |
Q |
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| T |
43764099 |
cggacatccagacggaggttcggtagagtctgatttcgaaatcggattcagtgtggacgacggtgtactgtggggattcggtcgcggttgtgttgcggat |
43764000 |
T |
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| Q |
119 |
catagccatgatcaaacacatcgctgctatccatg |
153 |
Q |
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| T |
43763999 |
catagccatgatcaaacacatcgctgctatccatg |
43763965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 229 - 502
Target Start/End: Complemental strand, 43763890 - 43763624
Alignment:
| Q |
229 |
aatcatatcattgaccacgttgcttgcttgattaactctcgagggttttgtcgtttagcgaattatttttttaactaaaatcnnnnnnnnnnnnnnnctt |
328 |
Q |
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| T |
43763890 |
aatcataccattgaccacgttgcttgcttgatcaactctcgagggttttgtcgtttagcgaattaattttt-aactaaaaacttatttttttttt--ctt |
43763794 |
T |
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| Q |
329 |
accataaaattacacaattttgaaatcaaattctacaacaaattagatggatagcacgattcaaata-------aactctgttatgattaatgaatataa |
421 |
Q |
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| T |
43763793 |
accataaaattacacaattttgaaatcaaattttacaacaaattagatggatagcacgattcaaatacgtggttaactctgttatgattaatgaatata- |
43763695 |
T |
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| Q |
422 |
tactgaacacaattcacattgattttgaatgtcatttaactatgctttttaagtgcatatttcaaaacaaataatagttga |
502 |
Q |
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| T |
43763694 |
---------caat-cacattgattttgaatgtcatttaactatgctttttaagtgcatatttcaaaacaaataatagttga |
43763624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 567
Target Start/End: Complemental strand, 43763631 - 43763599
Alignment:
| Q |
535 |
atagttgataaatatcatgtatatcttcttctc |
567 |
Q |
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| T |
43763631 |
atagttgataaatatcatgtatatcttcttctc |
43763599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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