View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4725_low_3 (Length: 459)

Name: NF4725_low_3
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4725_low_3
NF4725_low_3
[»] chr3 (15 HSPs)
chr3 (11-440)||(7034027-7034443)
chr3 (236-302)||(7119800-7119866)
chr3 (144-179)||(477091-477126)
chr3 (151-200)||(7119980-7120029)
chr3 (147-179)||(1205403-1205435)
chr3 (147-179)||(1303667-1303699)
chr3 (144-179)||(1187641-1187676)
chr3 (148-203)||(7127209-7127264)
chr3 (141-176)||(7179049-7179084)
chr3 (287-326)||(8032410-8032449)
chr3 (141-176)||(8399994-8400029)
chr3 (236-312)||(777267-777343)
chr3 (288-324)||(1205264-1205300)
chr3 (288-324)||(1303802-1303838)
chr3 (151-203)||(7103050-7103102)
[»] chr4 (4 HSPs)
chr4 (231-371)||(52187719-52187863)
chr4 (236-299)||(15581805-15581868)
chr4 (150-199)||(36590356-36590405)
chr4 (235-311)||(36616602-36616678)
[»] chr2 (3 HSPs)
chr2 (236-342)||(38990027-38990133)
chr2 (231-313)||(43863134-43863216)
chr2 (236-313)||(43866612-43866689)
[»] chr7 (6 HSPs)
chr7 (231-328)||(32414603-32414700)
chr7 (144-178)||(6845249-6845283)
chr7 (145-179)||(6849822-6849856)
chr7 (232-300)||(30597238-30597306)
chr7 (144-179)||(6890258-6890293)
chr7 (144-178)||(30597156-30597190)
[»] chr5 (3 HSPs)
chr5 (144-203)||(28092136-28092195)
chr5 (231-329)||(7022955-7023053)
chr5 (145-201)||(7023077-7023133)
[»] scaffold0438 (1 HSPs)
scaffold0438 (287-326)||(6268-6307)
[»] chr8 (6 HSPs)
chr8 (287-326)||(26291886-26291925)
chr8 (287-326)||(26305143-26305182)
chr8 (287-326)||(26338498-26338537)
chr8 (236-302)||(27700914-27700980)
chr8 (236-302)||(35336717-35336783)
chr8 (148-204)||(27700739-27700795)
[»] chr1 (1 HSPs)
chr1 (234-337)||(42601948-42602051)
[»] chr6 (2 HSPs)
chr6 (236-302)||(33839362-33839428)
chr6 (151-200)||(33839157-33839206)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 7034443 - 7034027
Alignment:
Q  11 cagagaagtatgcaaacataaaattgctaaacaaaaagatctcacattaacaagttgaatgaccacctcaccttaaaaagtaagttatcatcagaggaag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  7034443 cagagaagtatgcaaacataaaattgctaaacaaaaagatctcacattaacaagttgaatgaccacctcaccttaaaaagtaagttatccccagaggaag 7034344  T
Q  111 ttatgaattatgatcagagtaagttatcacgttaacctttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatggatgagcgtccg 210  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7034343 ttatgac-------cagagtaagttatcacgttaacctttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtattgatgagcgtccg 7034251  T
Q  211 aaccttcctactttcagtaacagtaacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcagga 310  Q
    |||||||||||||||||||||      |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7034250 aaccttcctactttcagtaac------ttcaagttatgcaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcagga 7034157  T
Q  311 agtattaggatcagtttaatgcaagtcgtattgataaaatttataaacacaatataaaaagcaagcatattaagacaatattgttgtaatttaaagtgaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7034156 agtattaggatcagtttaatgcaagtcgtattgataaaatttataaacacaatataaaaagcaagcatattaagacaatattgttgtaatttaaagtgaa 7034057  T
Q  411 aatgaaatggaacttttcttgccaaaacca 440  Q
    ||||||||||||||||||||||||||||||    
T  7034056 aatgaaatggaacttttcttgccaaaacca 7034027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 7119866 - 7119800
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagc 302  Q
    ||||||||||| |||||||||| |||| ||||||| |||  |||||||||||||| |||||||||||    
T  7119866 acttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaagc 7119800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 477126 - 477091
Alignment:
Q  144 aacctttgctgagggtgagttttgaagcaaaaagtc 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  477126 aacctttgctgagggtgagttttgaagcaaaaagtc 477091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 7120029 - 7119980
Alignment:
Q  151 gctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatgga 200  Q
    ||||| ||||||||||||||||||||||| ||||||| | ||||||||||    
T  7120029 gctgaaggtgagttttgaagcaaaaagtcgactattccatcaggtatgga 7119980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 1205435 - 1205403
Alignment:
Q  147 ctttgctgagggtgagttttgaagcaaaaagtc 179  Q
    |||||||||||||||||||||||||||||||||    
T  1205435 ctttgctgagggtgagttttgaagcaaaaagtc 1205403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 1303667 - 1303699
Alignment:
Q  147 ctttgctgagggtgagttttgaagcaaaaagtc 179  Q
    |||||||||||||||||||||||||||||||||    
T  1303667 ctttgctgagggtgagttttgaagcaaaaagtc 1303699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 1187676 - 1187641
Alignment:
Q  144 aacctttgctgagggtgagttttgaagcaaaaagtc 179  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1187676 aacctttgccgagggtgagttttgaagcaaaaagtc 1187641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 7127264 - 7127209
Alignment:
Q  148 tttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatggatga 203  Q
    ||||| || ||||||||||||||||||||||  ||||||| | |||||||||||||    
T  7127264 tttgcagaaggtgagttttgaagcaaaaagtaaactattccatcaggtatggatga 7127209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 7179084 - 7179049
Alignment:
Q  141 gttaacctttgctgagggtgagttttgaagcaaaaa 176  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7179084 gttaacctttgctgatggtgagttttgaagcaaaaa 7179049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 8032410 - 8032449
Alignment:
Q  287 aggaaagaacctaagccatcaggaagtattaggatcagtt 326  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  8032410 aggaaagaacctaagcaatcatgaagtattaggatcagtt 8032449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 8399994 - 8400029
Alignment:
Q  141 gttaacctttgctgagggtgagttttgaagcaaaaa 176  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8399994 gttaacctttgctgatggtgagttttgaagcaaaaa 8400029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 777267 - 777343
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaag 312  Q
    ||||||||||| ||||| |||  || ||||| ||| |||  |||||||| ||||||||||||||||| |||| ||||    
T  777267 acttcaagttacacaagtaagagagttcaacgttcaataaatcaggaaccaaggaaagaacctaagcaatcaagaag 777343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 1205300 - 1205264
Alignment:
Q  288 ggaaagaacctaagccatcaggaagtattaggatcag 324  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  1205300 ggaaagaacctaagcaatcaggaagtattaagatcag 1205264  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 1303802 - 1303838
Alignment:
Q  288 ggaaagaacctaagccatcaggaagtattaggatcag 324  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  1303802 ggaaagaacctaagcaatcaggaagtattaagatcag 1303838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 7103050 - 7103102
Alignment:
Q  151 gctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatggatga 203  Q
    ||||| ||||||||||||||||||||||| | |||||   |||||||||||||    
T  7103050 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatggatga 7103102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 231 - 371
Target Start/End: Complemental strand, 52187863 - 52187719
Alignment:
Q  231 cagtaacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagtattaggatcagtttaat 330  Q
    |||| |||||||| || |||||||| | | |||||||||| |||  ||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||    
T  52187863 cagtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaactaaagaaagaacctaagcaatcaagaagtattacgatcagtttaat 52187764  T
Q  331 gcaagtcgta---ttgat-aaaatttataaacacaatataaaaag 371  Q
    ||||||| ||   ||||| |||| ||||||| |||||||||||||    
T  52187763 gcaagtcctatttttgatcaaaaattataaatacaatataaaaag 52187719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 15581805 - 15581868
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaaccta 299  Q
    |||||||| ||| ||||||||  |||||| ||||| | || |||||||||||||||||||||||    
T  15581805 acttcaagctatgcaaggaagatagctcatccttcaaaagatcaggaactaaggaaagaaccta 15581868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 36590356 - 36590405
Alignment:
Q  150 tgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatgg 199  Q
    |||||| ||||||||||||| ||||||||| ||||||| | |||||||||    
T  36590356 tgctgacggtgagttttgaatcaaaaagtccactattccatcaggtatgg 36590405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 36616602 - 36616678
Alignment:
Q  235 aacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaa 311  Q
    |||||||||||| | || ||||| |||| ||||| | |||| |||||||||||||| |||| |||||| || |||||    
T  36616602 aacttcaagttacataaagaagggagcttaacctccaatagatcaggaactaaggacagaatctaagcaataaggaa 36616678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 38990133 - 38990027
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagtattaggatcagtttaatgcaag 335  Q
    |||||||||||||||||| | | |||||| ||||| |||  ||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||||    
T  38990133 acttcaagttatacaagggatggagctcagccttcaataaatcaggaaataaagaaagaacctaagcaatcaggaagtattacgatcagtttaatgcaag 38990034  T
Q  336 tcgtatt 342  Q
    || ||||    
T  38990033 tcatatt 38990027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 43863134 - 43863216
Alignment:
Q  231 cagtaacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagt 313  Q
    |||| ||||||||||| |||||||||| ||||| |||||| |||   || |||||||||||||||||||||| ||||||||||    
T  43863134 cagtgacttcaagttacacaaggaagggagctctaccttcaataaaccacgaactaaggaaagaacctaagcaatcaggaagt 43863216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 43866612 - 43866689
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagt 313  Q
    ||||||||||| |||||||||| | |||||||||| |||  ||| ||||||||||||| |||||||| ||||||||||    
T  43866612 acttcaagttaaacaaggaagggaactcaaccttcaataaatcacgaactaaggaaagcacctaagcaatcaggaagt 43866689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 32414700 - 32414603
Alignment:
Q  231 cagtaacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagtattaggatcagttta 328  Q
    |||| ||||||||||| |||||||||| | ||  |||||| |||  |||||||| ||||||||||||||| | ||||||||| |||||||||| ||||    
T  32414700 cagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaattta 32414603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 6845283 - 6845249
Alignment:
Q  144 aacctttgctgagggtgagttttgaagcaaaaagt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  6845283 aacctttgctgagggtgagttttgaagcaaaaagt 6845249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 6849856 - 6849822
Alignment:
Q  145 acctttgctgagggtgagttttgaagcaaaaagtc 179  Q
    |||||||||||||||||||||||||||||||||||    
T  6849856 acctttgctgagggtgagttttgaagcaaaaagtc 6849822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 30597238 - 30597306
Alignment:
Q  232 agtaacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaa 300  Q
    ||||||||||||||| |||||||| | | |||||||||| |||  ||||||||||| || |||||||||    
T  30597238 agtaacttcaagttacacaaggaatggaactcaaccttcaataaatcaggaactaacgagagaacctaa 30597306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 6890293 - 6890258
Alignment:
Q  144 aacctttgctgagggtgagttttgaagcaaaaagtc 179  Q
    |||||||| |||||||||||||||||||||||||||    
T  6890293 aacctttgttgagggtgagttttgaagcaaaaagtc 6890258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 30597156 - 30597190
Alignment:
Q  144 aacctttgctgagggtgagttttgaagcaaaaagt 178  Q
    ||||||||||||||||||||||||||| |||||||    
T  30597156 aacctttgctgagggtgagttttgaagtaaaaagt 30597190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 28092195 - 28092136
Alignment:
Q  144 aacctttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatggatga 203  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||| | |||||||||||||    
T  28092195 aacctttgccgagggtgagttttgaatcaaaaagtccactattccatcaggtatggatga 28092136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 7023053 - 7022955
Alignment:
Q  231 cagtaacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagtattaggatcagtttaa 329  Q
    |||| ||||||||||| |||||||||| |||||| || || |||  | |||||||||||||||||||||||  |||| || | ||||||||| ||||||    
T  7023053 cagtgacttcaagttacacaaggaagggagctcagccatcaataagttaggaactaaggaaagaacctaagaaatcaagacgaattaggatcggtttaa 7022955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 7023133 - 7023077
Alignment:
Q  145 acctttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatggat 201  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||| | |||||||||||    
T  7023133 acctttgctgagggtgactttcgaagcaaaaagtcaactattccatcaggtatggat 7023077  T

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Target: scaffold0438 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 6307 - 6268
Alignment:
Q  287 aggaaagaacctaagccatcaggaagtattaggatcagtt 326  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  6307 aggaaagaacctaagcaatcatgaagtattaggatcagtt 6268  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 26291925 - 26291886
Alignment:
Q  287 aggaaagaacctaagccatcaggaagtattaggatcagtt 326  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  26291925 aggaaagaacctaagcaatcatgaagtattaggatcagtt 26291886  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 26305182 - 26305143
Alignment:
Q  287 aggaaagaacctaagccatcaggaagtattaggatcagtt 326  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  26305182 aggaaagaacctaagcaatcatgaagtattaggatcagtt 26305143  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 26338537 - 26338498
Alignment:
Q  287 aggaaagaacctaagccatcaggaagtattaggatcagtt 326  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  26338537 aggaaagaacctaagcaatcatgaagtattaggatcagtt 26338498  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 27700914 - 27700980
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagc 302  Q
    ||||||||||| | ||||||| || |||||||||| |||  |||||||||| ||| |||||||||||    
T  27700914 acttcaagttacataaggaagaaaactcaaccttcaataaatcaggaactacggagagaacctaagc 27700980  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 35336783 - 35336717
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagc 302  Q
    ||||||||||| |||| ||||| |||| ||||| | |||  |||||||||||||| |||||||||||    
T  35336783 acttcaagttacacaaagaagggagcttaacctccaataaatcaggaactaaggagagaacctaagc 35336717  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 27700739 - 27700795
Alignment:
Q  148 tttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatggatgag 204  Q
    |||||||| || |||||||||||||||||||| ||||| | | ||||||| ||||||    
T  27700739 tttgctgaaggcgagttttgaagcaaaaagtcaactataccatcaggtatagatgag 27700795  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 42601948 - 42602051
Alignment:
Q  234 taacttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagtattaggatcagtttaatgca 333  Q
    ||||||||||||| |||| ||||  |||| ||||| | |||  |||||||||||||| |||| |||||  || |||  | |||||||||||||| |||||    
T  42601948 taacttcaagttacacaacgaagtgagcttaacctccaataaatcaggaactaaggagagaatctaagaaatgagggtgaattaggatcagttttatgca 42602047  T
Q  334 agtc 337  Q
    ||||    
T  42602048 agtc 42602051  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 33839362 - 33839428
Alignment:
Q  236 acttcaagttatacaaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagc 302  Q
    ||||||||||| |||| |||||||||| ||||| | |||  |||||||||||||| |||| ||||||    
T  33839362 acttcaagttacacaaagaaggaagcttaacctccaataaatcaggaactaaggagagaatctaagc 33839428  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 33839157 - 33839206
Alignment:
Q  151 gctgagggtgagttttgaagcaaaaagtctactattcgaccaggtatgga 200  Q
    ||||| ||||||||||||||||| ||||| ||||||| | ||||||||||    
T  33839157 gctgacggtgagttttgaagcaagaagtccactattccatcaggtatgga 33839206  T

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