View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725_low_4 (Length: 332)
Name: NF4725_low_4
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 33268996 - 33268678
Alignment:
| Q |
3 |
atcctgagagaagaggagtacgggaatctcgagctgttcctgcacctgatgccaatgctgaactggtagtgtcaatgcaggtaaaatcattgttaatttc |
102 |
Q |
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| T |
33268996 |
atcctgagagaagaggagtacgggaatctcgagctgttcctgcacctgatgccaatgctgaactggtagtgtcaatgcaggtaaaatcattgttaatttc |
33268897 |
T |
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| Q |
103 |
gatattgtcacaacttgttcatttgtggatttgtcattgctgtttatagatgatattgttctgtttgctgaaatcaaacatcctttcaagtgcatatgtc |
202 |
Q |
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| T |
33268896 |
gatattgtcacaacttgttcatttgtggatttgtcattgctgtttatagatgatattgttctgtttgctgaaatcaaacatcctttcaagtgcatatgtc |
33268797 |
T |
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| Q |
203 |
tttttgataaacaccaagatcagttaggtctctcaaatgcatcatatatatcatctggatgaactcttcctttatgcgtcaaataagtatgtgtatggca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268796 |
tttttgataaacaccaagatcagttaggtctctcaaatgcatcatatatatcatctggatgaactcttcctttatgcgtcaaataagtatgtgtatggca |
33268697 |
T |
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| Q |
303 |
tcttaagataaaatgatga |
321 |
Q |
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||||||||||||||||||| |
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| T |
33268696 |
tcttaagataaaatgatga |
33268678 |
T |
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