View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725_low_5 (Length: 285)
Name: NF4725_low_5
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 10337715 - 10337999
Alignment:
| Q |
1 |
tgtccaggagaaatactagctatgttagggccatcaggcagtggcaaaacaacactcctaacagcactcggaggccgtctcaacggcaaactaaccggaa |
100 |
Q |
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| T |
10337715 |
tgtccaggagaaatactagctatgttagggccatcaggcagtggcaaaacaacactcctaacagcactcggaggccgtctcaacggcaaactaaccggaa |
10337814 |
T |
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| Q |
101 |
aaaccacttacaacaatcaacctttctcgggttcaataaaaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccga |
200 |
Q |
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| T |
10337815 |
aaaccacttacaacaatcaacctttctcgggttcaataaaaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccga |
10337914 |
T |
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| Q |
201 |
aacactagtgttcactgcacttttgaggcttcctaaaaccttaacaagagatgaaaaagttgtgcatgacgtgtgagtgatttct |
285 |
Q |
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| T |
10337915 |
aacactagtgttcactgcacttttgaggcttcctaaaaccttaacaagagatgaaaaagttgtgcatgtagagagagtgatttct |
10337999 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 33718367 - 33718452
Alignment:
| Q |
136 |
ataaaaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcact |
221 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||||||||||||||| || |||||||| || || ||||| ||||| |
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| T |
33718367 |
ataaaaagaaacacaggttttgtcacacaagatgatgttctttaccctcacttaacggtaaccgaaacgcttgttttcacagcact |
33718452 |
T |
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