View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4725_low_6 (Length: 275)
Name: NF4725_low_6
Description: NF4725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4725_low_6 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 9231966 - 9231738
Alignment:
| Q |
38 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaata |
137 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9231966 |
atcaagagaattggcggaatccgctgaaaccatttcatagaagttcgttgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaata |
9231867 |
T |
|
| Q |
138 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9231866 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactggaattgatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
9231767 |
T |
|
| Q |
238 |
atgatgtatttgttttataatcgatattg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
9231766 |
atgatgtatttgttttataatcgatattg |
9231738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 38 - 266
Target Start/End: Original strand, 18350800 - 18351028
Alignment:
| Q |
38 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaata |
137 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18350800 |
atcaagagaattggcggaatccgctgaaaccatttcatagaagttcgttgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaata |
18350899 |
T |
|
| Q |
138 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18350900 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactggaattgatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
18350999 |
T |
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| Q |
238 |
atgatgtatttgttttataatcgatattg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
18351000 |
atgatgtatttgttttataatcgatattg |
18351028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 38 - 266
Target Start/End: Original strand, 16902202 - 16902430
Alignment:
| Q |
38 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaata |
137 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
16902202 |
atcaagagaattggcggaatctgctgaaaccacctcatagaagttcattgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaata |
16902301 |
T |
|
| Q |
138 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
237 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||| |||||| || || ||||||||||||||| |||||| ||||||||||||||| | |||||| |
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| T |
16902302 |
agcggtgaggtcctgtaattatgatttttttaagtaggttcttcctagaagtgatgattcagaaggggagaaccccgagtatctcaaattatactcacag |
16902401 |
T |
|
| Q |
238 |
atgatgtatttgttttataatcgatattg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
16902402 |
atgatgtatttgttttataatcgatattg |
16902430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 266
Target Start/End: Original strand, 2914006 - 2914234
Alignment:
| Q |
38 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaata |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2914006 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaata |
2914105 |
T |
|
| Q |
138 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2914106 |
tgcggtaaggtcctgtaattatgattttcttaagtatgtttttactggaattaatgattcataagggaagaaccatgagtatctcaaattaaagtcacag |
2914205 |
T |
|
| Q |
238 |
atgatgtatttgttttataatcgatattg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
2914206 |
atgatgtatttgttttataatcgatattg |
2914234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 17650239 - 17650011
Alignment:
| Q |
38 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaata |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
17650239 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttctaaaagcacatcaacttcgattctttaataatcaata |
17650140 |
T |
|
| Q |
138 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
237 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17650139 |
tgcggtaaggtcatgtaactatgattttcttaagtatgttcttactggaattgatgattcagaagggaagaaccatgagtatctcagattaaagtcacag |
17650040 |
T |
|
| Q |
238 |
atgatgtatttgttttataatcgatattg |
266 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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|
| T |
17650039 |
atgatgtatttgttttataattgatattg |
17650011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 90 - 266
Target Start/End: Complemental strand, 20635723 - 20635551
Alignment:
| Q |
90 |
atcctcttttttaaaagcacatcgacttcaattctttaataatcaatatgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
20635723 |
atcctcttttttaaaagcacatcgacttcgattctttaataatcaatatgcggtaaggtcatgtaattatgattttcttaaatatgttcttactgaaatt |
20635624 |
T |
|
| Q |
190 |
gatgattcagaagggaagaaccatgagtatctcaaattaaagtcacagatgatgtatttgttttataatcgatattg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
20635623 |
gatgattcagaagggaagaaccatgagtatctcaaattaaagt----gatgatgtatttgtttcataatcgatattg |
20635551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 38 - 266
Target Start/End: Original strand, 6488489 - 6488717
Alignment:
| Q |
38 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatcaata |
137 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
6488489 |
atcaagaaaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcgattctttaataatcaata |
6488588 |
T |
|
| Q |
138 |
tgcggtaaggtcctgtaattatgattttcttaagtatgttcttactgcaatggatgattcagaagggaagaaccatgagtatctcaaattaaagtcacag |
237 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6488589 |
tgcggtaaggtcctgtacttatgattttcttaagtatgttcttactagaattgatgattcagaatggaagaaccatgagtatctcaaattaaagtcacat |
6488688 |
T |
|
| Q |
238 |
atgatgtatttgttttataatcgatattg |
266 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
6488689 |
atgatgtatttgttttataatcaatattg |
6488717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 1001 - 1096
Alignment:
| Q |
38 |
atcaagagaattggcggaatcccctgaaaccatttcatagaagttcattgatatcctcttttttaaaagcacatcgacttcaattctttaataatc |
133 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||| ||||||| |
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| T |
1001 |
atcaagacaattggctgaatcccgtgaaaccatttcatagaagttcattgatatcttctttttataaagcaaatcgacttcgattcttgaataatc |
1096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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