View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4726-Insertion-1 (Length: 1025)
Name: NF4726-Insertion-1
Description: NF4726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4726-Insertion-1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 422 - 1025
Target Start/End: Complemental strand, 43546261 - 43545659
Alignment:
| Q |
422 |
gtgagtgagtgtgagtgaccatagccgaggagaatggagttggttgacgagagaagagcacagaggagtgtgtatctgttgatacgaattgaggtatttt |
521 |
Q |
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| T |
43546261 |
gtgagtgagtgtgagtgaccatagccgaggagaatggagttggttgacgagagaagagcacagaggagtgtgtatctgttgatacgaattgaggtatttt |
43546162 |
T |
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| Q |
522 |
cttctttgccattggagtccatttttgcgtcactaaggagattgaaactgtcgaatgaaactcaatagtgaatcacataaataaataaaactcatttaat |
621 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
43546161 |
cttctttgccattggagtccatttttccgtcactaaggagattgaaactgtcgaatgaaactcaatagtgaatcatataaataaataaaactcctttaat |
43546062 |
T |
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| Q |
622 |
gaaattcatgaacattaataagttagataccaaagaagat-aagtggtcgaaacctccttattaaattcaataagttgagattctagacttgtgagatac |
720 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43546061 |
gaaattcatgaacattaataagttagataccaaagaagataaagtggtcgaaacctccttattaaattcaataagttgagattctagacttgtgagatac |
43545962 |
T |
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| Q |
721 |
agttactggttatggtttcaacttgtcagtcgccactttactaatataaactaaatttcttaatagaatgaataatgaatttctagtagcaagtagtaaa |
820 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
43545961 |
agttactggttatggtttcaacttgtgagtcgccactttactaatataaactaaatttcttaatagaatgaataataaatttctagtggcaagtagtaaa |
43545862 |
T |
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| Q |
821 |
agagaaagaacatgtgatcaaacctgaaattataggtccgtttgttaatgcagcatagtgaaaactgaaaaggagccaaagaaaccatgcatgctttgca |
920 |
Q |
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| T |
43545861 |
agagaaagaacatgtgatcaaacctgaaattataggt-cgtttgttaatgcagcatagtgaaaactgaaaa-gagccaaagaaaccatgcatgctttgca |
43545764 |
T |
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| Q |
921 |
accacactcaaggtcctttaaaacaaaagggatcgccaatcattccaggtgcgtgtcatcaactcaactatg-tttaaattagggtcttttctgcaatgc |
1019 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
43545763 |
accacactcaaggtcctttaaaacaaaagggatcgccaatcattccaggtgcgtgtcatcaactcaactctgttttaaattagggtc-tttctgcaatgc |
43545665 |
T |
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| Q |
1020 |
acgcgg |
1025 |
Q |
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|||||| |
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| T |
43545664 |
acgcgg |
43545659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 43546675 - 43546322
Alignment:
| Q |
8 |
agttctgccgtatagagaggtgaaatcatgagtgcataaccaacaccaatgccggcaatcattctaccggttaagatgaaaaggaaggaaggtgcaagtg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43546675 |
agttctgccgtatagagaggtgaaatcatgagtgcataaccaacaccaatgccggcaatcattctaccggttaagatgaaaaggaaggaaggtgcaagtg |
43546576 |
T |
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| Q |
108 |
acatgaagatagctccgattaagaatgtggctgctgctaagacgattgtgtagcgtcgtccgatagtgtcggaggtttttccggaggctagtgatccgat |
207 |
Q |
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| T |
43546575 |
acatgaagatagctccgattaagaatgtggctgctgctaagacgattgtgtagcgtcgtccgatagtgtcggaggtttttccggaggctagtgatccgat |
43546476 |
T |
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| Q |
208 |
taaggaacacacgttgaggctgcctactagtatttcttgttgaatttgtgagatttttagattttcttttatcaacatgcttgctccactcataactcca |
307 |
Q |
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| T |
43546475 |
taaggaacacaagttgaggctgcctactagtatttcttgttgaattcgtgagatttttagattttcttttatcaacatgcttgctccactcataactcca |
43546376 |
T |
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| Q |
308 |
atatctgcaatgcattattatcagtatagtaacaatttaattcgattcaagtcc |
361 |
Q |
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| T |
43546375 |
atatctgcaatgcattattatcagtatagtaacaatttaattcgattcaagtcc |
43546322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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