View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4726-Insertion-2 (Length: 705)

Name: NF4726-Insertion-2
Description: NF4726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4726-Insertion-2
NF4726-Insertion-2
[»] chr5 (5 HSPs)
chr5 (169-701)||(35802663-35803190)
chr5 (222-705)||(10520616-10521109)
chr5 (482-682)||(35854141-35854332)
chr5 (10-59)||(35802528-35802577)
chr5 (10-59)||(35854545-35854594)
[»] chr4 (9 HSPs)
chr4 (205-332)||(55705573-55705700)
chr4 (205-314)||(45878670-45878779)
chr4 (262-325)||(54304053-54304116)
chr4 (211-306)||(56208877-56208972)
chr4 (366-403)||(45879155-45879192)
chr4 (205-273)||(47293221-47293289)
chr4 (638-704)||(45881915-45881981)
chr4 (547-621)||(54303766-54303840)
chr4 (257-314)||(45860206-45860263)
[»] chr8 (1 HSPs)
chr8 (205-332)||(7972415-7972542)
[»] chr2 (2 HSPs)
chr2 (205-306)||(24354011-24354112)
chr2 (620-704)||(24351100-24351184)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 169 - 701
Target Start/End: Original strand, 35802663 - 35803190
Alignment:
Q  169 attgtcaaggttaaagtattgagagagtgttcctcgaattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtat 268  Q
    ||||||||||||||||| |||||| |  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  35802663 attgtcaaggttaaagttttgagaaaccgttcctcgaattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtat 35802762  T
Q  269 cctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaagagaactgactgctgcccacattgatagagatgcatgaagaccac 368  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||| |||  ||||| ||||  |||||||||||| | |||    
T  35802763 cctgcacttgttgccgcatcagacattgaagcaatgacgggtttttttgaagcaagagatctgattgcctcccacgttgactgagatgcatgaaaatcac 35802862  T
Q  369 ctccttgactgtcaattcggataatagcagccttggannnnnnngactctttgaccatatcaatcttcttaatgatattacttgtgac---gccacaacg 465  Q
    |||||  ||||||||| |||| |||| | |||||| |       || |||||||||||| ||||||||| ||||| ||||||||||||   | ||| |      
T  35802863 ctcctacactgtcaatccggacaataaccgccttgaatttttttgaatctttgaccataccaatcttctcaatgaaattacttgtgacgatgtcactatc 35802962  T
Q  466 catggcctctgaggaccggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaa 565  Q
    ||| | | ||||||  |||||||||||||||||||||||||||   ||||||||||   | || ||||||||||| ||||||||||||| ||| ||||||    
T  35802963 catagtccctgaggctcggatgatggctatttgttctttagcc---tctgatattc---ccacagtccattttctgactttagagtattttctaaaagaa 35803056  T
Q  566 atcat---agggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcatttttta 662  Q
    |||||   |||||||||||||||||||||  |||||||||||||||||||||   ||||||||| || |||||| ||||||||||||||||| | ||| |    
T  35803057 atcataggagggagtgatttcaccccaag--tctccttcaagagagtgataa---catcatcatcatacactaagcttgatatgaaaccctcttctttca 35803151  T
Q  663 gtttatctacttgataaacaccttcatttacgaagtttt 701  Q
    ||||||||| | |||||||||||||||||| ||||||||    
T  35803152 gtttatctaatcgataaacaccttcatttatgaagtttt 35803190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 222 - 705
Target Start/End: Complemental strand, 10521109 - 10520616
Alignment:
Q  222 taagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaa----------gcaatgacgggtt 311  Q
    ||||||||||||||||||||  ||| |||||  |||||||||||||||||||| ||| ||| |||||||||||||||          |||| ||||||||    
T  10521109 taagattttctgctacgatatctcctgctcccgttgccatgtagtatcctgcacttgctgctacatcagacattgaaagacattgaagcaacgacgggtt 10521010  T
Q  312 tttcggaagcaagagaactgactgctgcccacattgatagagatgcatgaagaccacctccttgactgtcaattcggataatagcagccttggannnnnn 411  Q
    |||| | || |||||| |||| | ||  ||||||| |  ||||  || ||| | ||||||||  ||||||||||||||||||| ||||||||            
T  10521009 tttccgcaggaagagacctgatttctttccacattaactgagaatcacgaacatcacctcctgtactgtcaattcggataataacagccttgatttcttt 10520910  T
Q  412 ngactctttgaccatatcaatcttcttaatgatattacttgtgacgccaca---acgcatggcctctgaggaccggatgatggctatttgttctttagcc 508  Q
     ||| ||||||||||| ||||||||| |||||  |||||||||||   |     || ||| | | |||||   ||||||||||||||||||||||| |||    
T  10520909 tgacgctttgaccataccaatcttctcaatgaacttacttgtgacaatatccgtacccatagtccctgagactcggatgatggctatttgttctttcgcc 10520810  T
Q  509 tcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatttcacccc---aagtctctccttcaaga 605  Q
    |||   |||||||||||    ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||   |||||||| |||||| |    
T  10520809 tct---gatattccaaca---gtccattttctaactttagagtatttttcaaaagaaatcatagggagtgatttcacccccccaagtctcttcttcaaca 10520716  T
Q  606 gagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaac 705  Q
    || ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  10520715 gattgataacctcatgatcatcatgcactaaacttgatatgaaaccctcattttttagtttatctacttgatagacaccttcatttatgaagttttcaac 10520616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 482 - 682
Target Start/End: Complemental strand, 35854332 - 35854141
Alignment:
Q  482 cggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatt 581  Q
    ||||||||||| ||||||||||||||||||   |||||| | ||    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  35854332 cggatgatggcaatttgttctttagcctct---gatattgccaca---gtccattttctgcctttagagtattttctaaaagaaatcatagggagtgatt 35854239  T
Q  582 tcaccccaagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaac 681  Q
    | |||||||| ||||||||||||||||| ||||| ||||||||   || |||||| ||||||||||||||||| | ||| |||||||||| | |||||||    
T  35854238 taaccccaagcctctccttcaagagagttataacctcatcatc---atacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaac 35854142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 35802528 - 35802577
Alignment:
Q  10 tgcgtccttaccggtccaaagcctcctatgttcaacctttttcgtcttgt 59  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| ||||||    
T  35802528 tgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgt 35802577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 35854594 - 35854545
Alignment:
Q  10 tgcgtccttaccggtccaaagcctcctatgttcaacctttttcgtcttgt 59  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| ||||||    
T  35854594 tgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgt 35854545  T

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Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 205 - 332
Target Start/End: Complemental strand, 55705700 - 55705573
Alignment:
Q  205 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 304  Q
    ||||||||||||||| ||||||||||||||||| ||  |||| ||||| ||||||||||| ||||||||| | | |||||| ||| ||||||||||||||    
T  55705700 aattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgcactggctgccacgtcatacattgaagcaatg 55705601  T
Q  305 acgggtttttcggaagcaagagaactga 332  Q
    || ||||||| || ||||||||| ||||    
T  55705600 acaggtttttgggcagcaagagacctga 55705573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 45878670 - 45878779
Alignment:
Q  205 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 304  Q
    ||||||||||||||| || ||| ||||||| || |||| ||| ||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  45878670 aattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctgccacatcagacattgaagcaatg 45878769  T
Q  305 acgggttttt 314  Q
    || |||||||    
T  45878770 actggttttt 45878779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 54304116 - 54304053
Alignment:
Q  262 gtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaaga 325  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  54304116 gtagtatcctgcacttgttgccacatcagatattgaagcaatgatgggtttttcggcagcaaga 54304053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 56208877 - 56208972
Alignment:
Q  211 accagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgac 306  Q
    ||||||||| |||||||||||||| || |||  ||| ||||| |||||||||| ||||||| || ||| || || || |||||| |||||||||||    
T  56208877 accagttaaggtaagattttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctgtcatatgagacatcgaagcaatgac 56208972  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 45879155 - 45879192
Alignment:
Q  366 cacctccttgactgtcaattcggataatagcagccttg 403  Q
    |||||||| |||||||||||||||||||||||||||||    
T  45879155 cacctcctggactgtcaattcggataatagcagccttg 45879192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 47293289 - 47293221
Alignment:
Q  205 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgc 273  Q
    ||||||||||||||| |||||||||||||| || |||  ||| || || ||||||| ||||||||||||    
T  47293289 aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgccacgtagtatcctgc 47293221  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 638 - 704
Target Start/End: Original strand, 45881915 - 45881981
Alignment:
Q  638 cttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaa 704  Q
    |||| |||||||||||| | ||| ||| | ||||||||||| ||||||||||||| |||||| ||||    
T  45881915 cttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagttctcaa 45881981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 621
Target Start/End: Complemental strand, 54303840 - 54303766
Alignment:
Q  547 agagtattctctgaaagaaatcatagggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatc 621  Q
    |||||||||| |||||||||  | ||| ||||||||||||||||| || |||||||||   |||||||| |||||    
T  54303840 agagtattctttgaaagaaacaaaaggcagtgatttcaccccaagcctttccttcaagttggtgataacatcatc 54303766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 45860206 - 45860263
Alignment:
Q  257 gccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggttttt 314  Q
    ||||| ||||||||| || | | ||||||||||||||||||||||||||  |||||||    
T  45860206 gccatatagtatcctccactagctgccacatcagacattgaagcaatgattggttttt 45860263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 205 - 332
Target Start/End: Original strand, 7972415 - 7972542
Alignment:
Q  205 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 304  Q
    ||||||||||||||| ||||| |||||||| || |||  ||| || || ||||||||||||||||||||  |  |||||| |||||||||  |||||||     
T  7972415 aattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgccatgtagtatcctgcgctcattgccagatcagacatcaaagcaata 7972514  T
Q  305 acgggtttttcggaagcaagagaactga 332  Q
    || ||||||| |||||||||||| ||||    
T  7972515 actggttttttggaagcaagagacctga 7972542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 24354112 - 24354011
Alignment:
Q  205 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 304  Q
    ||||||||||||||| |||||| ||||||| || ||||   | | ||| |||||||||||||||||| || ||| ||||||||||| ||| |||||||||    
T  24354112 aattgaaccagttaaggtaagactttctgcaacaatagcatcagttcccattgccatgtagtatcctccacttgctgccacatcagccatcgaagcaatg 24354013  T
Q  305 ac 306  Q
    ||    
T  24354012 ac 24354011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 620 - 704
Target Start/End: Complemental strand, 24351184 - 24351100
Alignment:
Q  620 tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaa 704  Q
    ||||||| || || |||| ||||||| |  ||||| | ||| || ||||| |||||||||||||||||||||| |||||| ||||    
T  24351184 tcatcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagttctcaa 24351100  T

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