View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4726-Insertion-3 (Length: 499)

Name: NF4726-Insertion-3
Description: NF4726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4726-Insertion-3
NF4726-Insertion-3
[»] chr1 (1 HSPs)
chr1 (379-413)||(52164612-52164646)
[»] chr7 (1 HSPs)
chr7 (378-413)||(11072217-11072252)
[»] chr4 (3 HSPs)
chr4 (374-412)||(24257698-24257736)
chr4 (379-412)||(9199512-9199545)
chr4 (379-412)||(9199750-9199783)
[»] chr8 (1 HSPs)
chr8 (379-412)||(26083903-26083936)
[»] chr5 (1 HSPs)
chr5 (378-414)||(6697934-6697970)
[»] chr2 (1 HSPs)
chr2 (378-414)||(28125535-28125571)


Alignment Details
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 52164612 - 52164646
Alignment:
Q  379 atctttctttctaaagcttgtctggtcaagcaatc 413  Q
    |||||||||||||||||||||||||||||||||||    
T  52164612 atctttctttctaaagcttgtctggtcaagcaatc 52164646  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 413
Target Start/End: Complemental strand, 11072252 - 11072217
Alignment:
Q  378 aatctttctttctaaagcttgtctggtcaagcaatc 413  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11072252 aatctttctttctaaagcttgtccggtcaagcaatc 11072217  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 24257698 - 24257736
Alignment:
Q  374 atctaatctttctttctaaagcttgtctggtcaagcaat 412  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  24257698 atctaatctttcttactaaagcttgtttggtcaagcaat 24257736  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 9199512 - 9199545
Alignment:
Q  379 atctttctttctaaagcttgtctggtcaagcaat 412  Q
    ||||||||| ||||||||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaat 9199545  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 9199750 - 9199783
Alignment:
Q  379 atctttctttctaaagcttgtctggtcaagcaat 412  Q
    ||||||||| ||||||||||||||||||||||||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaat 9199783  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 26083903 - 26083936
Alignment:
Q  379 atctttctttctaaagcttgtctggtcaagcaat 412  Q
    ||||||||| ||||||||||||||||||||||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaat 26083936  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 6697934 - 6697970
Alignment:
Q  378 aatctttctttctaaagcttgtctggtcaagcaatct 414  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  6697934 aatctttcttactaaaacttgtctggtcaagcaatct 6697970  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 28125535 - 28125571
Alignment:
Q  378 aatctttctttctaaagcttgtctggtcaagcaatct 414  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  28125535 aatctttcttactaaagcttgtctggtcaagctatct 28125571  T

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