View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4726_high_2 (Length: 241)
Name: NF4726_high_2
Description: NF4726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4726_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39082460 - 39082236
Alignment:
| Q |
1 |
gtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082460 |
gtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatat |
39082361 |
T |
|
| Q |
101 |
gagccgcaccatatattgtaatcccatcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082360 |
gagccgcaccatatattgtaatcccatcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacaca |
39082261 |
T |
|
| Q |
201 |
atgatgaatgtgtataccatgaatt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
39082260 |
atgatgaatgtgtataccatgaatt |
39082236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 31727097 - 31726939
Alignment:
| Q |
1 |
gtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31727097 |
gtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatat |
31726998 |
T |
|
| Q |
101 |
gagccgcaccatatattgtaatcccatcaccatccgatctttctttcctaacacgatgg |
159 |
Q |
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|
| T |
31726997 |
gagccgcaccatagattgtgatcccatcaccatccgatctttctttcctaacacgatgg |
31726939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 39076004 - 39075959
Alignment:
| Q |
8 |
aattattagaaatagtaacagccgttgatccatgaacaacatcaat |
53 |
Q |
| |
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|||||||||||||||||| ||| || |||||||||| ||||||||| |
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| T |
39076004 |
aattattagaaatagtaatagctgtagatccatgaataacatcaat |
39075959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43131445 - 43131344
Alignment:
| Q |
1 |
gtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatat |
100 |
Q |
| |
|
||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||| ||| ||| || ||||| ||||||||||||||||||| || |
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|
| T |
43131445 |
gtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatcattacagttagacaaagaacaatgatccacccaaacat |
43131346 |
T |
|
| Q |
101 |
ga |
102 |
Q |
| |
|
|| |
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|
| T |
43131345 |
ga |
43131344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7593372 - 7593472
Alignment:
| Q |
1 |
gtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatat |
100 |
Q |
| |
|
|||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||| ||| |||||| ||||| ||||||||||| | |||||||| |
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| T |
7593372 |
gtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccatcacgacaattagacaaagaacaatgatcaatccaaatat |
7593471 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
7593472 |
g |
7593472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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