View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4726_low_1 (Length: 1221)

Name: NF4726_low_1
Description: NF4726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4726_low_1
NF4726_low_1
[»] chr4 (8 HSPs)
chr4 (255-1212)||(49583343-49584296)
chr4 (5-254)||(49583037-49583286)
chr4 (604-768)||(49588989-49589153)
chr4 (122-247)||(5198998-5199124)
chr4 (130-214)||(4848615-4848699)
chr4 (177-254)||(15522606-15522683)
chr4 (76-145)||(29866154-29866223)
chr4 (308-341)||(49588574-49588607)
[»] chr5 (2 HSPs)
chr5 (68-189)||(37247603-37247723)
chr5 (98-141)||(27983524-27983567)
[»] chr2 (1 HSPs)
chr2 (68-145)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (123-214)||(7411339-7411429)
chr8 (118-186)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (116-191)||(6134221-6134296)
chr6 (120-180)||(2721839-2721899)
[»] chr1 (4 HSPs)
chr1 (75-195)||(26828549-26828669)
chr1 (64-136)||(34664919-34664991)
chr1 (167-235)||(35811949-35812017)
chr1 (205-254)||(16424901-16424950)


Alignment Details
Target: chr4 (Bit Score: 880; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 880; E-Value: 0
Query Start/End: Original strand, 255 - 1212
Target Start/End: Original strand, 49583343 - 49584296
Alignment:
Q  255 agagcaaactcaatttgccttaaaaccaactattgtatatatatgctccctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 354  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583343 agagcaaactcaattttccttaaaaccaactattgtaaatatatgctatctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 49583442  T
Q  355 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583443 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 49583542  T
Q  455 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaatagcattacctatcccaataacttggataaaga 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49583543 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaataggattacctatcccaataacttggataaaga 49583642  T
Q  555 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583643 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 49583742  T
Q  655 aatcgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 754  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583743 aattgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 49583842  T
Q  755 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattt 854  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49583843 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattt 49583942  T
Q  855 tcactgaatcaaggcaacgtgagcttttgtttcgtctgatgccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 954  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583943 tcactgaatcaaggcaacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 49584042  T
Q  955 aaagtttttcattttaatatcgattgttactccgtccactgtcatggattggatctatacttattgatttgtcttccatacttattatttgctatgttca 1054  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  49584043 aaagtttttcattttaatatcgattgttactccgtccattgtcatggattggatctatacttattgatttgtcttccatactta----ttgctatgttca 49584138  T
Q  1055 attgattggtaggtgtcagagacacttgcagaaaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttg 1154  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49584139 attgattggtaggtgtcagagacacttgcagagaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttg 49584238  T
Q  1155 atggattagcaatcggtaaaggnnnnnnngatcttatatgcccccatgttgatgatgt 1212  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  49584239 atggattagcaatcggtaaaggaaaaaaagatcttatatgcccccatgttgatgatgt 49584296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 49583037 - 49583286
Alignment:
Q  5 tatcatatccaagattttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583037 tatcatatccaaggttttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 49583136  T
Q  105 ttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583137 ttgtcgcagcgtgaattaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 49583236  T
Q  205 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583237 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 49583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 604 - 768
Target Start/End: Original strand, 49588989 - 49589153
Alignment:
Q  604 acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaac 703  Q
    |||||||||| |||||||||||| ||| ||| ||| ||| | ||||||||||||||||||||||  |||||||||||| || |||| |||||||||||||    
T  49588989 acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggccaatttagtccttggcttttatacatttgggaagaac 49589088  T
Q  704 ttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatgg 768  Q
    |||||| |||||||||  |||||  |||||||||| |||||||| | | ||||||||||||||||    
T  49589089 ttcgttcaagtgaaaaggtttatacgcaataagaaaatgaaggataaactgtcattctattatgg 49589153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 5198998 - 5199124
Alignment:
Q  122 aatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttca-tagtgtaa 220  Q
    ||||| ||||||||| || | |||| ||||||| ||||| |||| |||| ||||||||| |||||||||||||| ||||||| |||||||| || | |||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataa 5199097  T
Q  221 ttattttcataatttagtaatgaattt 247  Q
    || |||||||||||| |||||||||||    
T  5199098 ttcttttcataattttgtaatgaattt 5199124  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 4848699 - 4848615
Alignment:
Q  130 cattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 214  Q
    ||||||| || | |||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcata 4848615  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 15522606 - 15522683
Alignment:
Q  177 aatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaatttatttctt 254  Q
    |||| |||||||||| ||| ||| ||| |||||| ||| ||||||||||||||| |||  ||||||||||| ||||||    
T  15522606 aataacttaatttcttattgtttattcataattttataatgtaattattttcattattatgtaatgaatttgtttctt 15522683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 29866223 - 29866154
Alignment:
Q  76 tgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 145  Q
    |||||| |||||||| || |  |||||||||||||  | |||||||||||||||||||||| || |||||    
T  29866223 tgttactgatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatctta 29866154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 49588574 - 49588607
Alignment:
Q  308 aaatatatttaaatttttggacaggtgaatgcag 341  Q
    |||||||||||||| |||||||||||||||||||    
T  49588574 aaatatatttaaatatttggacaggtgaatgcag 49588607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 37247723 - 37247603
Alignment:
Q  68 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatctt 167  Q
    ||||||| |||||| |||||||| || |  |||||||||||||| | ||||||||||||||||| |||| || | ||||  |||| | |||| ||||| |    
T  37247723 atttcgagtgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatattat-taaatcatttattctatcat 37247625  T
Q  168 atattgtataatagcttaattt 189  Q
    ||| ||||||||| ||||||||    
T  37247624 atagtgtataataacttaattt 37247603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 27983524 - 27983567
Alignment:
Q  98 attgtggttgtcgcagcgtgaattaatcacaacattgcataatt 141  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||    
T  27983524 attgtggtcgtcgcagggtgaattaatcacaacattgcacaatt 27983567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 5430357 - 5430280
Alignment:
Q  68 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 145  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||| | ||||||||||||||| |||||| || |||||    
T  5430357 atttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaactctta 5430280  T

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Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 7411339 - 7411429
Alignment:
Q  123 atcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 214  Q
    ||||||||||| || || |||||| ||||||| ||||  ||||||||| ||||||||| |||||||||| ||| |||||||||  |||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttct-attgtttcttcttcttttcata 7411429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 3424305 - 3424372
Alignment:
Q  118 aattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaa 186  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||||| |||| ||||||||| |||||    
T  3424305 aattaatcacaacaatgcacaata-ttataaaaattatttatactatcatataatgtataataacttaa 3424372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 6134221 - 6134296
Alignment:
Q  116 tgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttct 191  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| ||||||    
T  6134221 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttct 6134296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 2721899 - 2721839
Alignment:
Q  120 ttaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataata 180  Q
    ||||||||||| |||||||| | |||| ||||||| |||||||||| |||| |||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataata 2721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 26828669 - 26828549
Alignment:
Q  75 ttgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgt 174  Q
    |||||| |||||||||||| |  |||||  ||||||| | || ||||||||||||||||||| || | |||| ||| ||| |||||||| | |||| |||    
T  26828669 ttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T
Q  175 ataatagcttaatttctcatt 195  Q
      || | ||||||||||||||    
T  26828569 gaaaaaacttaatttctcatt 26828549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 34664991 - 34664919
Alignment:
Q  64 cgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgca 136  Q
    |||||||||| ||||||| |||||||||||  | |||||||||||| | |  ||||||||| |||||||||||    
T  34664991 cgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgca 34664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 35812017 - 35811949
Alignment:
Q  167 tatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataattt 235  Q
    |||| ||||||||| |||||||||||| | ||||||||||||| |||| ||||||| |||  |||||||    
T  35812017 tataatgtataataacttaatttctcactgtttcttcttaattccataatgtaattctttcaataattt 35811949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 16424901 - 16424950
Alignment:
Q  205 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 254  Q
    |||||||||| || |||||||||| |||||| ||||||||||| ||||||    
T  16424901 taatttcataatgaaattattttcttaattttgtaatgaatttgtttctt 16424950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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