View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4726_low_3 (Length: 289)

Name: NF4726_low_3
Description: NF4726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4726_low_3
NF4726_low_3
[»] chr5 (5 HSPs)
chr5 (1-275)||(12643606-12643880)
chr5 (52-166)||(12529243-12529357)
chr5 (52-165)||(35841665-35841778)
chr5 (188-275)||(12528851-12528938)
chr5 (188-275)||(35842084-35842171)
[»] chr4 (6 HSPs)
chr4 (54-170)||(24146694-24146810)
chr4 (52-166)||(27730456-27730570)
chr4 (52-166)||(45965952-45966066)
chr4 (188-275)||(27730064-27730151)
chr4 (188-275)||(45966371-45966458)
chr4 (188-258)||(24147094-24147164)
[»] chr8 (2 HSPs)
chr8 (53-172)||(11403131-11403250)
chr8 (190-275)||(11402764-11402849)
[»] chr6 (2 HSPs)
chr6 (52-166)||(29303685-29303799)
chr6 (188-275)||(29304104-29304191)
[»] chr1 (2 HSPs)
chr1 (52-166)||(29282497-29282611)
chr1 (188-275)||(29282105-29282192)
[»] chr2 (4 HSPs)
chr2 (52-166)||(42913356-42913470)
chr2 (52-166)||(42300538-42300652)
chr2 (188-275)||(42912964-42913051)
chr2 (188-265)||(42300957-42301034)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 12643606 - 12643880
Alignment:
Q  1 acaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattct 100  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12643606 acaaaaggtataaaacgttcaattcagaaatagtatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattct 12643705  T
Q  101 gaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgactacaataatttcaataaatgaaagcaaggaagaggtg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12643706 gaataacaaagtggtagagaaaattctacacactatgccgatgaagtttgatcatgtggtgactacaataatttcaataaatgaaagcaaggaagaggtg 12643805  T
Q  201 gaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    || |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  12643806 gagacaattttagttataccaatcatgacaaaggaaaaggatattacaaccaagagagaacaaattatagttgtt 12643880  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 12529357 - 12529243
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    |||||||||||| ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | |||    
T  12529357 gtgttataaatcttgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatga 12529258  T
Q  152 tcatgtggtgactac 166  Q
    |||||||||||||||    
T  12529257 tcatgtggtgactac 12529243  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 35841665 - 35841778
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    |||||||||||| ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | |||    
T  35841665 gtgttataaatcttgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatga 35841764  T
Q  152 tcatgtggtgacta 165  Q
    ||||||||||||||    
T  35841765 tcatgtggtgacta 35841778  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 12528938 - 12528851
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    ||||||| |||||||||||||||| |||  |  || | ||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  12528938 caaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgtt 12528851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 35842084 - 35842171
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    ||||||| |||||||||||||||| |||  |  || | ||||| ||||||||| | |||||||||||||||||||||| || ||||||    
T  35842084 caaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttgttacaaccaagagagaacaaataatggttgtt 35842171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 24146694 - 24146810
Alignment:
Q  54 gttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatc 153  Q
    |||||||||| |||||||||||| ||||||| |||| |||||||||   ||| ||| || || ||||||||| ||| ||||||||||||||| | |||||    
T  24146694 gttataaatcttgtcaacaagatgagggtgtatggagaagatattccagatagcaaggtagtggagaaaattttacgcaccatgccgatgaaatatgatc 24146793  T
Q  154 atgtggtgactacaata 170  Q
    |||||||||||||||||    
T  24146794 atgtggtgactacaata 24146810  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 27730570 - 27730456
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    |||||||||||| ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | |||    
T  27730570 gtgttataaatcttgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatga 27730471  T
Q  152 tcatgtggtgactac 166  Q
    |||||||||||||||    
T  27730470 tcatgtggtgactac 27730456  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 45965952 - 45966066
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    |||||||||||| ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | |||    
T  45965952 gtgttataaatcttgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatga 45966051  T
Q  152 tcatgtggtgactac 166  Q
    |||||||||||||||    
T  45966052 tcatgtggtgactac 45966066  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 27730151 - 27730064
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    ||||||| |||||||||||||||| |||  |  || | ||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  27730151 caaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgtt 27730064  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 45966371 - 45966458
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    ||||||| |||||||||||| ||| |||  |  || | ||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  45966371 caaggaaaaggtggaaacaactttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgtt 45966458  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 24147094 - 24147164
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagag 258  Q
    |||||||||||||||||||||||| | |  | ||| | ||||| ||||||||| |||||||||||||||||    
T  24147094 caaggaagaggtggaaacaattttggctccaacaaccgtggcagaggaagaggttattacaaccaagagag 24147164  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 11403250 - 11403131
Alignment:
Q  53 tgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgat 152  Q
    ||||||||||| ||||||||| || | ||||| |||| ||||||||| | ||| ||| ||||| ||||||||||||||||| ||| |||| ||||||| |    
T  11403250 tgttataaatcttgtcaacaaaatgacggtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgataaagtttggt 11403151  T
Q  153 catgtggtgactacaataat 172  Q
    |||||||||||||| |||||    
T  11403150 catgtggtgactacgataat 11403131  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 11402849 - 11402764
Alignment:
Q  190 aggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    |||||||||||||||||||||| ||| |||||| | ||||| || |||||| | |||||| ||||||||| ||||||| |||||||    
T  11402849 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgtt 11402764  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 29303685 - 29303799
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    |||||||||||| ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | |||    
T  29303685 gtgttataaatcttgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatga 29303784  T
Q  152 tcatgtggtgactac 166  Q
    |||||||||||||||    
T  29303785 tcatgtggtgactac 29303799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 29304104 - 29304191
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    ||||||| |||||||||||||||| |||  |  || | ||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  29304104 caaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgtt 29304191  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 29282611 - 29282497
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    |||||||||||| ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | |||    
T  29282611 gtgttataaatcttgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatga 29282512  T
Q  152 tcatgtggtgactac 166  Q
    |||||||||||||||    
T  29282511 tcatgtggtgactac 29282497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 29282192 - 29282105
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    ||||||| |||||||||||||||| |||  |  || | ||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  29282192 caaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgtt 29282105  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 42913470 - 42913356
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    |||||||||||  ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | |||    
T  42913470 gtgttataaatattgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatga 42913371  T
Q  152 tcatgtggtgactac 166  Q
    |||||||||||||||    
T  42913370 tcatgtggtgactac 42913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 42300538 - 42300652
Alignment:
Q  52 gtgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttga 151  Q
    ||||||| |||| ||||||||| || || |||| |||| |||||||||   ||| ||| ||||| ||||||||||||  ||||||||||||||| | |||    
T  42300538 gtgttatgaatcttgtcaacaaaatgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctatgcaccatgccgatgaaatatga 42300637  T
Q  152 tcatgtggtgactac 166  Q
    |||||||||||||||    
T  42300638 tcatgtggtgactac 42300652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 42913051 - 42912964
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaattatagttgtt 275  Q
    ||||||| |||||||||||||||| |||  |  || | ||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  42913051 caaggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgtt 42912964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 42300957 - 42301034
Alignment:
Q  188 caaggaagaggtggaaacaattttagttataccaatcatggcaaaggaagaggatattacaaccaagagagaacaaat 265  Q
    |||||||||||||||||||||||| |||  |  |  | ||||| ||||||||| ||||||||||||||||||||||||    
T  42300957 caaggaagaggtggaaacaattttggttccaatagccgtggcagaggaagaggttattacaaccaagagagaacaaat 42301034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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