View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727-Insertion-10 (Length: 331)
Name: NF4727-Insertion-10
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 17175532 - 17175209
Alignment:
| Q |
8 |
atcatgatcagagaaacaagaaaagaaaacgtgatgattctgttgaaagaagaagaaataacaattgggggagactcacttctcaatccattgaaaccaa |
107 |
Q |
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| T |
17175532 |
atcatgatcagagaaacaagaaaagaaaacgtgatgattctaatggaagaagaagaaataacaattgggggagtctcacttctcaatccattgaaaccaa |
17175433 |
T |
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| Q |
108 |
cgttgtttgtgtctgtttatcactaggtggtgcttcttgttctaccctctcttgttcaacagagaacaacaagaaaaagaagacatgcaatgatgatgat |
207 |
Q |
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| T |
17175432 |
tgttgtttgtgtctgtttatcactaggtggtgcttcttgttctaccctctcttgttcaacagagaacaacaagaaaaagaagacatgcaatgttgatgac |
17175333 |
T |
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| Q |
208 |
gatgctgatgttgaaaccctaagaaattgggaatgttcaactgagttgatgctatacgatgatccatggaagataaagaaagtgttgacacaaactgatc |
307 |
Q |
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| T |
17175332 |
gatgctgatgttgaaaccctaagaaattgggaatgttcaactgagttgatgctatacgatgatccatggaagataaagaaagtgttgacacaaactgatc |
17175233 |
T |
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| Q |
308 |
ttggcaataacagtagacttttgc |
331 |
Q |
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| T |
17175232 |
ttggcaataacagtagacttttgc |
17175209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 17191661 - 17191632
Alignment:
| Q |
178 |
aagaaaaagaagacatgcaatgatgatgat |
207 |
Q |
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| T |
17191661 |
aagaaaaagaagacatgcaatgatgatgat |
17191632 |
T |
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