View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4727-Insertion-11 (Length: 284)

Name: NF4727-Insertion-11
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4727-Insertion-11
NF4727-Insertion-11
[»] chr1 (17 HSPs)
chr1 (8-143)||(13244450-13244585)
chr1 (148-284)||(13244115-13244251)
chr1 (8-149)||(13080788-13080929)
chr1 (8-150)||(12963797-12963939)
chr1 (8-143)||(13271714-13271849)
chr1 (8-151)||(19279089-19279232)
chr1 (12-144)||(13094531-13094663)
chr1 (12-144)||(13129960-13130092)
chr1 (34-146)||(13086261-13086373)
chr1 (12-144)||(13070104-13070236)
chr1 (12-144)||(13161653-13161785)
chr1 (12-144)||(13204591-13204723)
chr1 (148-208)||(12963584-12963644)
chr1 (155-208)||(19278841-19278894)
chr1 (12-144)||(13101132-13101264)
chr1 (8-65)||(30368115-30368172)
chr1 (12-144)||(13007332-13007464)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 13244585 - 13244450
Alignment:
Q  8 aactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggttt 107  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  13244585 aactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggttt 13244486  T
Q  108 cacatatggctccatgaaggtaaacaagcttatcaa 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  13244485 cacatatggctccatgaaggtaaacaagcttatcaa 13244450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 13244251 - 13244115
Alignment:
Q  148 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacattttcatttcctttgtactcagttatacatttgtc 247  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||    
T  13244251 tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc 13244152  T
Q  248 caagaagtggtgaagattttcttttgctgccttgccc 284  Q
    |||||| ||||||||||||||| | ||||||||||||    
T  13244151 caagaattggtgaagattttctctagctgccttgccc 13244115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 13080929 - 13080788
Alignment:
Q  8 aactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggttt 107  Q
    |||||||||||||||| |||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||| | || |||| |||||||||||| ||    
T  13080929 aactttgtatttggactaacatggtctccactaggaagtttatccgatttgatagcacacttgtgctgaaatgctacagaaggatatagccttaaggctt 13080830  T
Q  108 cacatatggctccatgaaggtaaacaagcttatcaagctctt 149  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  13080829 cacatatggctccatgaaggtaaactagcttatcaagctctt 13080788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 12963939 - 12963797
Alignment:
Q  8 aactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggttt 107  Q
    |||||||||||||||| |||||||| ||||||||||| |||||| ||||| || ||||||||||| | |||||  | ||||||| | |||||||| | ||    
T  12963939 aactttgtatttggactaacatggtctccactaggtaatatatctgatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagctt 12963840  T
Q  108 cacatatggctccatgaaggtaaacaagcttatcaagctcttt 150  Q
    |||| || ||||||||||| |||||||||||||||||| ||||    
T  12963839 cacaaatagctccatgaagataaacaagcttatcaagcccttt 12963797  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 13271714 - 13271849
Alignment:
Q  8 aactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggttt 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| || |  ||||||||||| | |||||  | ||||||| | || || |||||||    
T  13271714 aactttgtgtttggaccaacatggtgtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagtctcaaggttt 13271813  T
Q  108 cacatatggctccatgaaggtaaacaagcttatcaa 143  Q
    ||||||| ||| ||||||||||||  ||||||||||    
T  13271814 cacatatagctgcatgaaggtaaatcagcttatcaa 13271849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 19279232 - 19279089
Alignment:
Q  8 aactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggttt 107  Q
    |||||||||||| ||| |||||||| |||||||||||||||||| || || |  ||||||||||| | |||||  | ||| ||| | |||||||||| ||    
T  19279232 aactttgtatttagactaacatggtctccactaggtagtatatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggctt 19279133  T
Q  108 cacatatggctccatgaaggtaaacaagcttatcaagctctttc 151  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||    
T  19279132 cacatatagctccatgaagataaactagcttatcaagctctttc 19279089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 13094531 - 13094663
Alignment:
Q  12 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 111  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||| |||||  | |||| ||| |  | ||||||| | |||||||||||||||||    
T  13094531 ttgtatttggagtaacatggtatccactaggtagtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcaca 13094630  T
Q  112 tatggctccatgaaggtaaacaagcttatcaag 144  Q
    ||| |||||||| ||||| || |||||||||||    
T  13094631 tatagctccatggaggtatactagcttatcaag 13094663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 13129960 - 13130092
Alignment:
Q  12 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 111  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| | |||  | |||| ||| |  | ||||||| | |||||||||||||||||    
T  13129960 ttgtatttggactaacatggtatccactaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcaca 13130059  T
Q  112 tatggctccatgaaggtaaacaagcttatcaag 144  Q
    ||| |||||||| ||||| || |||||||||||    
T  13130060 tatagctccatggaggtatactagcttatcaag 13130092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 13086261 - 13086373
Alignment:
Q  34 tccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaaca 133  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||  | ||||||| | ||||| || | ||||||||| |||||||||||||| ||     
T  13086261 tccactaggtagtatatcagctttgattgcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacact 13086360  T
Q  134 agcttatcaagct 146  Q
    || |||| |||||    
T  13086361 agtttattaagct 13086373  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 13070236 - 13070104
Alignment:
Q  12 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 111  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||||||| | || || |||||||||||    
T  13070236 ttgtatttggactaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcaca 13070137  T
Q  112 tatggctccatgaaggtaaacaagcttatcaag 144  Q
    ||| |||||||||||||| || || ||||||||    
T  13070136 tatagctccatgaaggtacactagattatcaag 13070104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 13161653 - 13161785
Alignment:
Q  12 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 111  Q
    |||||||||||| || | | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||| ||| | |||||||||||||||||    
T  13161653 ttgtatttggactaatacgttctccactaggtagtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcaca 13161752  T
Q  112 tatggctccatgaaggtaaacaagcttatcaag 144  Q
    ||| |||||||| ||||| || |||||||||||    
T  13161753 tatagctccatggaggtatactagcttatcaag 13161785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 13204591 - 13204723
Alignment:
Q  12 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 111  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||| |||||  | |||| ||| |  | ||||||| | || || |||| ||||||    
T  13204591 ttgtatttggactaacacgctctccactaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcaca 13204690  T
Q  112 tatggctccatgaaggtaaacaagcttatcaag 144  Q
    ||| |||||||||||||| || |||||||||||    
T  13204691 tatagctccatgaaggtacactagcttatcaag 13204723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 12963644 - 12963584
Alignment:
Q  148 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatc 208  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||| || ||||||||||    
T  12963644 tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatc 12963584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 19278894 - 19278841
Alignment:
Q  155 ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatc 208  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||    
T  19278894 ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatc 19278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 13101132 - 13101264
Alignment:
Q  12 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 111  Q
    |||||||||||| || | | | ||||||||| |||||||| |||||||| | |||  | |||| ||| |  | ||||||| | ||||| |||||||||||    
T  13101132 ttgtatttggactaaaacgctctccactaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcaca 13101231  T
Q  112 tatggctccatgaaggtaaacaagcttatcaag 144  Q
    ||| |||||||| ||||| || |||||||||||    
T  13101232 tatagctccatggaggtacactagcttatcaag 13101264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 30368172 - 30368115
Alignment:
Q  8 aactttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcac 65  Q
    ||||| |||||||||| |||||  | ||||||||||||||||||||||||||| ||||    
T  30368172 aacttggtatttggactaacattctctccactaggtagtatatcagatttgattgcac 30368115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 13007332 - 13007464
Alignment:
Q  12 ttgtatttggaccaacatggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcaca 111  Q
    |||||||||||| |||| | | |||||||||||||||||| || ||||| |||||  | |||| ||| |  | ||||||| | ||||| | || ||||||    
T  13007332 ttgtatttggactaacacgctctccactaggtagtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcaca 13007431  T
Q  112 tatggctccatgaaggtaaacaagcttatcaag 144  Q
    ||  |||||||| ||||| || |||||||||||    
T  13007432 tagagctccatggaggtacactagcttatcaag 13007464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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