View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4727-Insertion-13 (Length: 174)
Name: NF4727-Insertion-13
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727-Insertion-13 |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 13448424 - 13448590
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13448424 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcccgat |
13448523 |
T |
|
| Q |
108 |
atttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
13448524 |
atttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccct |
13448590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 7e-66
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 13454895 - 13455061
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
13454895 |
agttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctcgat |
13454994 |
T |
|
| Q |
108 |
atttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
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||| ||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||| |
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| T |
13454995 |
gtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccct |
13455061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 13440261 - 13440427
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgat |
107 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| || |
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| T |
13440261 |
agttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcctaat |
13440360 |
T |
|
| Q |
108 |
atttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
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||||||||||| |||||||| || |||||||||||||||||| | | |||||||||||||||||| |
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| T |
13440361 |
gtttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccct |
13440427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 3417645 - 3417483
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgat |
107 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| || || |
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| T |
3417645 |
agttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaat |
3417546 |
T |
|
| Q |
108 |
atttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttcttt |
170 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||| ||| | ||||||||||||| |
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| T |
3417545 |
gtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttt |
3417483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 12540746 - 12540912
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgat |
107 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || || |
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| T |
12540746 |
agtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaat |
12540845 |
T |
|
| Q |
108 |
atttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||| ||| ||||||||||||||||| |
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| T |
12540846 |
gtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccct |
12540912 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 28385395 - 28385561
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgat |
107 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||||| || || ||||||||||| || || |
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| T |
28385395 |
agttccctccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaat |
28385494 |
T |
|
| Q |
108 |
atttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
|||||||| ||||||||||| || | |||||||||||||||| ||| | ||||||||||||||||| |
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| T |
28385495 |
gtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccct |
28385561 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 6589 - 6460
Alignment:
| Q |
48 |
gtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaaccacttttct |
144 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||| || |
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|
| T |
6589 |
gtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcct |
6490 |
T |
|
| Q |
145 |
ttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
||||| ||| |||||||||||||||||| |
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|
| T |
6489 |
ttctcctcttcactctcatcttctttccct |
6460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 7e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 48958205 - 48958374
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacc---cttcttccc |
104 |
Q |
| |
|
|||||| ||||||||| ||||||||| | ||||| ||| |||||||| ||| ||||||||||||||| ||||||||||||||||| |||||| || |
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| T |
48958205 |
agttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttcc |
48958304 |
T |
|
| Q |
105 |
gatatttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
|| ||||||||||| ||||| ||||| ||||||||| ||||||| ||| ||||| |||||||||||| |
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|
| T |
48958305 |
aatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccct |
48958374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 48961354 - 48961523
Alignment:
| Q |
8 |
agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcc---c |
104 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| || | ||||| || ||| |||||||||||||||| ||| |||||||||||||||||||| | |
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|
| T |
48961354 |
agttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttc |
48961453 |
T |
|
| Q |
105 |
gatatttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||| |||||||| ||| ||||||||| |||||||| |
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|
| T |
48961454 |
aatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttccct |
48961523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 48965401 - 48965555
Alignment:
| Q |
19 |
caatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctctt |
118 |
Q |
| |
|
||||| |||||||| | ||||| || |||||||||| ||| ||| || || |||||||||||||| |||||||||||||| || || |||||||||| |
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|
| T |
48965401 |
caatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctctt |
48965500 |
T |
|
| Q |
119 |
caaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccc |
173 |
Q |
| |
|
| |||||||| ||||||||||||| ||||| ||| |||||||| |||||||| |
|
|
| T |
48965501 |
cgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttccc |
48965555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 48912461 - 48912319
Alignment:
| Q |
10 |
ttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccga |
106 |
Q |
| |
|
|||| ||| ||||| ||||||||| | ||||| || | |||||||| ||| |||| ||||| ||||||||| |||| |||| | |||||||| |||| |
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|
| T |
48912461 |
ttccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccga |
48912362 |
T |
|
| Q |
107 |
tatttctctcttcaaatcccttcggtaaccacttttctttctc |
149 |
Q |
| |
|
|| ||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
48912361 |
taattctctcttcaaacccctttggcaaccatttttctttctc |
48912319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 48974263 - 48974336
Alignment:
| Q |
101 |
tcccgatatttctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || | ||||||||| ||||| | ||||||||||| ||||||||| |
|
|
| T |
48974263 |
tcccaatattcctctcttcaaatccctttggcatccacttttcgttctcgtcattgctctcatcctctttccct |
48974336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 12641592 - 12641430
Alignment:
| Q |
15 |
cccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacc---cttcttcccgatattt |
111 |
Q |
| |
|
||||||||||||||| ||| | ||||| |||| |||||| || ||| | |||||||||||||| |||||||||| ||||| ||| || | | |||| |
|
|
| T |
12641592 |
cccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacattt |
12641493 |
T |
|
| Q |
112 |
ctctcttcaaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
12641492 |
ctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccct |
12641430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 12590279 - 12590196
Alignment:
| Q |
19 |
caatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc |
102 |
Q |
| |
|
||||| |||||||| | ||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12590279 |
caatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttc |
12590196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 12483568 - 12483413
Alignment:
| Q |
25 |
gtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc------ccgatatttctctctt |
118 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||| || ||||| ||||| ||||| ||||| |||||| |||| | || |||||||| | |
|
|
| T |
12483568 |
gtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgtttctctcct |
12483469 |
T |
|
| Q |
119 |
caaatcccttcggtaaccacttttctttctctactttgctctcatcttctttccct |
174 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | | |||||||||||| |||||| |
|
|
| T |
12483468 |
caaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttccct |
12483413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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