View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4727-Insertion-2 (Length: 956)
Name: NF4727-Insertion-2
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727-Insertion-2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 639
Target Start/End: Original strand, 4600101 - 4600730
Alignment:
| Q |
8 |
gttcgatctctagaaactagtgtaaccgctatcttactagtaacatttttctattgagaaaataatgcatagcacaaggtttggaaaacacgnnnnnnnn |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4600101 |
gttcgatctctagaaactagtgtaaccgctatcttactagtaacatttttctattgagaaaataatgcatagcacaaggtttggaaaacacgaaaaaaa- |
4600199 |
T |
|
| Q |
108 |
ntgagtacacccttcaacacggcaagaaatagacgagagaaataaaagggaaaaaaccaagtaaaaccttatgaatttacaaatagtgaagggtcatttt |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4600200 |
-tgagtacacccttcaacacggtaagaaatagatgagagaaataaaagggaaaaaaccaagtaaaaccttatgaatttacaaatagtgaagggtcaattt |
4600298 |
T |
|
| Q |
208 |
gtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaacattaagcata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4600299 |
gtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaacattaagcata |
4600398 |
T |
|
| Q |
308 |
agttaggacatgatagttgnnnnnnngcatgataaatgaagaaaaatacaaaggaagggttagttaatttacaggattaagcagtgccttgtagggagaa |
407 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4600399 |
agttaggacatgattgttgaaaaaaagcatgataaatgaagaaaaatacaaaggaagggttagttgatttacaggattaagcagtgccttgtagggagaa |
4600498 |
T |
|
| Q |
408 |
tcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaagattaggatcatacttgttccaaattttccttaaatccttaaaaacta |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4600499 |
tcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaagattaggatcatacttgttccaaattttccttaaatccttaaaaacta |
4600598 |
T |
|
| Q |
508 |
gtggcttgtgcttgttttgaagagttttgaaagttgtttcagtacaatgtgacaggtcctgtcaaagaatatgtagaatgagatgaaatgtaaactaatg |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4600599 |
gtggcttgtgcttgttttgaagagttttgaaagttgtttcagtacaatgtgacaggttctgtcaaagaatatgtagaatgagatgaaatgtaaactaatg |
4600698 |
T |
|
| Q |
608 |
ttttacacaagagaccaattatgctaaaacaa |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4600699 |
ttttacacaagagaccaattatgctaaaacaa |
4600730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 160 - 591
Target Start/End: Original strand, 4572848 - 4573277
Alignment:
| Q |
160 |
aaaaccaagtaaaaccttatgaatttacaaatagtgaagggtcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgagg |
259 |
Q |
| |
|
|||| |||| |||||||||||| |||||| ||| |||| | ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4572848 |
aaaatcaagcaaaaccttatgactttacatata-tgaaag-tcattgtgtaacatacctagtgaattgtcattctgattctcataactgaatgtatgagg |
4572945 |
T |
|
| Q |
260 |
aaagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgatagttgnnnnnnngcatgataaatgaagaaaaatacaaa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4572946 |
aaagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgatagtcgaaaaaaagcatgataaatgaagaaaaatacaaa |
4573045 |
T |
|
| Q |
360 |
ggaagggttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaa |
459 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
4573046 |
ggaagggttagtttatttacaggattaagcaatgccttgtggggagaatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaa |
4573145 |
T |
|
| Q |
460 |
gattaggatcatacttgttccaaattttccttaaatccttaaaaactagtggcttgtgcttgttttgaagagttttgaaagttgtttcagtacaatgtga |
559 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||| | || ||||| ||||| |||||||||||||||||| |
|
|
| T |
4573146 |
gatttggatcatacttgtcccaaattttccttagatccttacaaactagtggcttgcgcttgttctcaacagtttggaaagctgtttcagtacaatgtga |
4573245 |
T |
|
| Q |
560 |
caggtcctgtcaaagaatatgtagaatgagat |
591 |
Q |
| |
|
| |||||||||||||||||||| ||||||| |
|
|
| T |
4573246 |
tatatcctgtcaaagaatatgtaggatgagat |
4573277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 688 - 912
Target Start/End: Original strand, 4600758 - 4600980
Alignment:
| Q |
688 |
attttaagttgtattgtgaattagatatcagaataaaaatacaaactgtccaatctctatctaacaaccgacatttaccggctgtagtgactgcaacgtt |
787 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4600758 |
attttaagttgtattgtgaatcagatatcagaataaaaatacaaactgtccgatctctatctaacaaccgacatttaccggctgtagtgactgcaacgtt |
4600857 |
T |
|
| Q |
788 |
gaagttgtagtcgatctggattggtaagagagtataccaaaactgtacaaatgtatcaagccaagttgatgcaatttcatataaaatcagtcttctaaga |
887 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4600858 |
gaagttgtagtcaatctggattggtaagagagtatacc-aaactgtacaaatgtatcaagccaagttgatgcaatttcatataaaatcagtc-tctaaga |
4600955 |
T |
|
| Q |
888 |
aacgtagctatattacgacttatgg |
912 |
Q |
| |
|
|| ||||||||||||||||| |||| |
|
|
| T |
4600956 |
aaagtagctatattacgactcatgg |
4600980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 165 - 640
Target Start/End: Original strand, 4591808 - 4592296
Alignment:
| Q |
165 |
caagtaaaaccttatgaatttacaaatag-tgaagggtcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaag |
263 |
Q |
| |
|
|||| |||||||||||| |||||||||| || || |||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4591808 |
caagcaaaaccttatgagtttacaaatatatgtaga-tcattttgtaccatacctaatgaattgtcattctgactctcataactgaatgtatgcggaaag |
4591906 |
T |
|
| Q |
264 |
attgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatg------------atagttgnnnnnnngcatgataaatgaagaaa |
351 |
Q |
| |
|
|||||||||||||||| |||||||| || | ||||||| |||| ||| || |||| || | || || ||||||||||| ||| |
|
|
| T |
4591907 |
attgagttgtatggctgcaataattcattgacacattaatcataggttgggccatgtcacaatatgtgatggctgaaaataagcttgataaatgaaaaaa |
4592006 |
T |
|
| Q |
352 |
aatac--aaaggaagggttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttc |
449 |
Q |
| |
|
|||| |||| ||| ||| ||| |||||| ||||||||||| |||||||| ||||||||||||| || |||||||| |||||||||||||||||| || |
|
|
| T |
4592007 |
aatatgtaaagaaagtgttcgtttatttactggattaagcagcgccttgtaaggagaatcatccagcaataatgtgttcgactcattgtaatatcccctc |
4592106 |
T |
|
| Q |
450 |
tcccaaggaagattaggatcatacttgttccaaattttccttaaatccttaaaaactagtggcttgtgcttgttttgaagagttttgaaagttgtttcag |
549 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||| |
|
|
| T |
4592107 |
tcccaaggaagattcggatcatacttgtcccaaattttccttaaatccttaaaaactagtggcttgcgcttgttctcaagagttttgaaagctgtttcag |
4592206 |
T |
|
| Q |
550 |
tacaatgtgacaggtcctgtcaaagaatatgtagaatgagatgaaatgtaaactaatgttttacacaagagaccaattatgctaaaacaat |
640 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| ||| || || |||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
4592207 |
tacaatgagacatatcctgtcaaagaatatgtagaatgagat-taatctagaccaatgttttactctagagaccaattatgctaaagcaat |
4592296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 362 - 591
Target Start/End: Original strand, 4584275 - 4584504
Alignment:
| Q |
362 |
aagggttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaaga |
461 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||| ||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
4584275 |
aagggttagtttatttacaggattaaggaatgccttgtagggagaatcatccagcagcaacgtgttcgagtcattgtaatatttcttctcccaaggaaga |
4584374 |
T |
|
| Q |
462 |
ttaggatcatacttgttccaaattttccttaaatccttaaaaactagtggcttgtgcttgttttgaagagttttgaaagttgtttcagtacaatgtgaca |
561 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
4584375 |
ttcggatcatacttgtcccaaattttccttaaatccttaaaaactagtggcttgcgcttgttctcaagagttttgaaagctgtttcagtacaatgtgaca |
4584474 |
T |
|
| Q |
562 |
ggtcctgtcaaagaatatgtagaatgagat |
591 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4584475 |
aatcctgtcaaagaatatgtagaatgagat |
4584504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 366 - 595
Target Start/End: Original strand, 4605495 - 4605723
Alignment:
| Q |
366 |
gttagttaatttacaggattaagcagtgccttgtagggagaatcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaagattag |
465 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||||||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| | |
|
|
| T |
4605495 |
gttagtttatttacaggattaagtaaccccttgtagggagagtcatccaaaagcaatgtatttgattcattgtagtaccccttctcccaaggaagattcg |
4605594 |
T |
|
| Q |
466 |
gatcatacttgttccaaattttccttaaatccttaaaaactagtggcttgtgcttgttttgaagagttttgaaagttgtttcagtacaatgtgacaggtc |
565 |
Q |
| |
|
|||| ||||| | ||||||||| || | ||||||||| || | || |||| |||||| || |||||| ||| | |||| ||||||| ||||| | | |
|
|
| T |
4605595 |
gatcgtacttatcccaaatttttctcagatccttaaacaccactgtcttgcgcttgtcttcaagagtactgatatttgtcacagtacattgtgaaatgct |
4605694 |
T |
|
| Q |
566 |
ctgtcaaagaatatgtagaatgagatgaaa |
595 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |
|
|
| T |
4605695 |
ctgtcaaa-aatatgtagattgagatgaaa |
4605723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 4584109 - 4584219
Alignment:
| Q |
201 |
tcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaacatt |
300 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||| ||| | |
|
|
| T |
4584109 |
tcattttgta-catacctaatgaattgtcattctgattctcataactgaatgtatgcggaaagattgagttgtgtggctgcaataattcatcaacacaat |
4584207 |
T |
|
| Q |
301 |
aagcataagtta |
312 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
4584208 |
aaccataagtta |
4584219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 4605333 - 4605453
Alignment:
| Q |
199 |
ggtcattttgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaaca |
298 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||| ||| |||| |||||| || |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
4605333 |
ggtcattttgtaccatacctagtgatttgtccttctttttccgataagtgaatgagtgtggaaagattgagttgtatggctacaacaatgtatcaaaaca |
4605432 |
T |
|
| Q |
299 |
ttaagcataagttaggacatg |
319 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
4605433 |
ttaaacataagttaggacatg |
4605453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University