View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4727-Insertion-5 (Length: 585)

Name: NF4727-Insertion-5
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4727-Insertion-5
NF4727-Insertion-5
[»] chr3 (22 HSPs)
chr3 (8-585)||(10878403-10878982)
chr3 (414-511)||(10917628-10917724)
chr3 (236-298)||(14954593-14954655)
chr3 (452-509)||(20736632-20736690)
chr3 (412-474)||(15332014-15332076)
chr3 (250-298)||(12727148-12727196)
chr3 (250-298)||(12963998-12964046)
chr3 (249-297)||(19250301-19250349)
chr3 (242-298)||(21639193-21639249)
chr3 (451-509)||(20747315-20747374)
chr3 (236-290)||(4433150-4433204)
chr3 (468-565)||(10922909-10923005)
chr3 (438-564)||(16201793-16201919)
chr3 (249-298)||(3237890-3237939)
chr3 (481-542)||(4768221-4768281)
chr3 (250-323)||(11073624-11073695)
chr3 (414-495)||(21528691-21528775)
chr3 (250-298)||(1241987-1242035)
chr3 (250-298)||(11067442-11067489)
chr3 (250-290)||(22128299-22128338)
chr3 (250-298)||(33582415-33582463)
chr3 (250-298)||(41494200-41494248)
[»] chr8 (27 HSPs)
chr8 (250-585)||(18565166-18565500)
chr8 (451-572)||(21838307-21838430)
chr8 (451-564)||(5825265-5825379)
chr8 (414-513)||(13644627-13644727)
chr8 (414-513)||(13745052-13745152)
chr8 (438-545)||(23433596-23433703)
chr8 (236-298)||(17287076-17287138)
chr8 (208-269)||(20310890-20310951)
chr8 (208-269)||(21097523-21097584)
chr8 (488-583)||(211410-211506)
chr8 (488-583)||(240750-240846)
chr8 (488-583)||(725033-725129)
chr8 (488-583)||(794105-794201)
chr8 (483-565)||(20267854-20267937)
chr8 (483-565)||(21054483-21054566)
chr8 (249-298)||(30422343-30422392)
chr8 (242-298)||(18676839-18676895)
chr8 (242-298)||(22672960-22673015)
chr8 (466-525)||(23586730-23586790)
chr8 (250-298)||(40846317-40846365)
chr8 (250-298)||(23586996-23587046)
chr8 (305-375)||(5825124-5825193)
chr8 (250-298)||(1210613-1210661)
chr8 (250-298)||(13431531-13431579)
chr8 (242-298)||(19942418-19942474)
chr8 (250-298)||(27739070-27739117)
chr8 (250-298)||(43773308-43773356)
[»] chr7 (20 HSPs)
chr7 (397-572)||(19143415-19143592)
chr7 (397-572)||(20742814-20742991)
chr7 (480-564)||(19414083-19414168)
chr7 (183-565)||(20052478-20052865)
chr7 (451-565)||(22974597-22974712)
chr7 (248-318)||(9802127-9802196)
chr7 (250-296)||(16033134-16033180)
chr7 (249-298)||(16557525-16557574)
chr7 (249-298)||(16608088-16608137)
chr7 (308-349)||(19843294-19843334)
chr7 (250-298)||(33604099-33604147)
chr7 (248-318)||(9761734-9761803)
chr7 (236-290)||(13263017-13263071)
chr7 (253-299)||(17916931-17916977)
chr7 (236-290)||(18440570-18440624)
chr7 (237-298)||(13027866-13027927)
chr7 (250-298)||(13138840-13138889)
chr7 (250-298)||(4493739-4493787)
chr7 (250-298)||(10884085-10884133)
chr7 (254-298)||(23125160-23125204)
[»] scaffold0711 (2 HSPs)
scaffold0711 (412-545)||(2267-2401)
scaffold0711 (181-297)||(2659-2776)
[»] chr6 (18 HSPs)
chr6 (317-583)||(17206201-17206462)
chr6 (278-572)||(34659189-34659484)
chr6 (481-572)||(27167307-27167397)
chr6 (468-583)||(20396335-20396451)
chr6 (483-572)||(19730888-19730978)
chr6 (451-511)||(10481542-10481603)
chr6 (234-298)||(11129932-11129995)
chr6 (397-464)||(19122481-19122548)
chr6 (242-298)||(13435072-13435128)
chr6 (250-298)||(32543458-32543506)
chr6 (243-297)||(8868903-8868958)
chr6 (236-290)||(28252366-28252420)
chr6 (249-298)||(15301412-15301461)
chr6 (250-298)||(15532536-15532585)
chr6 (468-583)||(21689464-21689581)
chr6 (250-298)||(12041053-12041101)
chr6 (242-290)||(17446553-17446601)
chr6 (250-298)||(19085327-19085375)
[»] chr5 (22 HSPs)
chr5 (418-572)||(22747771-22747926)
chr5 (250-516)||(18303561-18303828)
chr5 (250-538)||(12063264-12063555)
chr5 (398-553)||(9823621-9823776)
chr5 (483-565)||(24885850-24885931)
chr5 (416-537)||(19570263-19570385)
chr5 (441-565)||(24495125-24495249)
chr5 (451-545)||(24515483-24515576)
chr5 (479-564)||(28759885-28759970)
chr5 (247-298)||(33021842-33021893)
chr5 (250-298)||(9088174-9088223)
chr5 (250-298)||(19642716-19642764)
chr5 (242-298)||(21199905-21199961)
chr5 (250-298)||(31589888-31589936)
chr5 (502-572)||(12046681-12046752)
chr5 (236-290)||(13533162-13533216)
chr5 (236-290)||(17456607-17456661)
chr5 (250-298)||(6513324-6513373)
chr5 (249-298)||(19570501-19570549)
chr5 (465-545)||(22820779-22820859)
chr5 (250-298)||(31487403-31487451)
chr5 (254-298)||(42242815-42242859)
[»] scaffold0084 (3 HSPs)
scaffold0084 (416-575)||(30600-30761)
scaffold0084 (414-572)||(18073-18233)
scaffold0084 (250-298)||(31786-31834)
[»] scaffold0004 (3 HSPs)
scaffold0004 (397-572)||(382128-382305)
scaffold0004 (278-345)||(382010-382074)
scaffold0004 (242-298)||(210595-210650)
[»] scaffold0211 (1 HSPs)
scaffold0211 (397-570)||(25067-25240)
[»] chr4 (18 HSPs)
chr4 (392-546)||(22317323-22317478)
chr4 (209-539)||(8910812-8911134)
chr4 (414-565)||(22223402-22223554)
chr4 (451-565)||(18445318-18445432)
chr4 (226-298)||(21810747-21810819)
chr4 (276-349)||(18777480-18777553)
chr4 (489-564)||(18777264-18777339)
chr4 (236-298)||(17527246-17527308)
chr4 (236-298)||(14905193-14905256)
chr4 (468-538)||(19052737-19052807)
chr4 (468-585)||(39981166-39981285)
chr4 (252-298)||(13026985-13027031)
chr4 (236-290)||(14836899-14836953)
chr4 (245-298)||(14903275-14903327)
chr4 (451-511)||(21589034-21589095)
chr4 (250-298)||(24628765-24628814)
chr4 (480-512)||(24715477-24715509)
chr4 (250-298)||(40859900-40859948)
[»] chr2 (26 HSPs)
chr2 (412-553)||(26655295-26655438)
chr2 (461-572)||(26653975-26654087)
chr2 (412-542)||(17418191-17418322)
chr2 (97-198)||(25917343-25917444)
chr2 (451-538)||(21822978-21823066)
chr2 (438-513)||(8684985-8685061)
chr2 (418-572)||(16152912-16153066)
chr2 (250-345)||(24216899-24216990)
chr2 (404-538)||(21823789-21823924)
chr2 (248-298)||(24851529-24851579)
chr2 (249-298)||(22312716-22312765)
chr2 (242-298)||(24575218-24575275)
chr2 (242-290)||(40780496-40780544)
chr2 (398-538)||(17435587-17435725)
chr2 (412-538)||(27766142-27766267)
chr2 (441-514)||(19563955-19564029)
chr2 (480-553)||(21770253-21770326)
chr2 (236-298)||(22782488-22782550)
chr2 (226-298)||(27766406-27766479)
chr2 (250-298)||(6391861-6391909)
chr2 (430-474)||(16158029-16158073)
chr2 (250-298)||(19539647-19539695)
chr2 (250-298)||(21538044-21538092)
chr2 (250-298)||(28551777-28551825)
chr2 (242-290)||(28702089-28702137)
chr2 (250-290)||(41122543-41122583)
[»] chr1 (20 HSPs)
chr1 (392-572)||(12439856-12440037)
chr1 (399-524)||(9757155-9757278)
chr1 (311-374)||(9757307-9757370)
chr1 (250-321)||(12440083-12440153)
chr1 (243-298)||(27857974-27858029)
chr1 (243-298)||(23975674-23975729)
chr1 (236-290)||(9345960-9346014)
chr1 (441-553)||(19019801-19019914)
chr1 (249-298)||(22153020-22153069)
chr1 (247-290)||(46181690-46181733)
chr1 (441-510)||(12669814-12669884)
chr1 (241-298)||(22601413-22601471)
chr1 (236-298)||(23917082-23917144)
chr1 (236-294)||(25449426-25449483)
chr1 (250-298)||(7308986-7309034)
chr1 (250-290)||(12625390-12625430)
chr1 (250-290)||(22465656-22465696)
chr1 (277-321)||(24286231-24286274)
chr1 (250-298)||(30892260-30892308)
chr1 (497-545)||(31910762-31910809)
[»] scaffold0062 (1 HSPs)
scaffold0062 (418-572)||(1028-1184)
[»] scaffold0121 (1 HSPs)
scaffold0121 (468-563)||(10792-10888)
[»] scaffold0471 (1 HSPs)
scaffold0471 (249-298)||(2650-2699)
[»] scaffold0315 (1 HSPs)
scaffold0315 (242-298)||(7858-7914)
[»] scaffold0275 (1 HSPs)
scaffold0275 (250-298)||(23824-23872)
[»] scaffold0032 (1 HSPs)
scaffold0032 (451-510)||(78757-78817)
[»] scaffold0439 (1 HSPs)
scaffold0439 (236-298)||(7574-7637)
[»] scaffold0047 (1 HSPs)
scaffold0047 (236-290)||(33733-33787)
[»] scaffold0038 (1 HSPs)
scaffold0038 (236-290)||(52566-52620)
[»] scaffold0290 (1 HSPs)
scaffold0290 (242-298)||(19520-19577)
[»] scaffold0041 (1 HSPs)
scaffold0041 (271-345)||(25772-25841)
[»] scaffold0116 (1 HSPs)
scaffold0116 (242-290)||(21809-21857)
[»] scaffold0081 (1 HSPs)
scaffold0081 (250-298)||(13191-13239)
[»] scaffold0040 (1 HSPs)
scaffold0040 (226-298)||(8568-8639)
[»] scaffold0037 (1 HSPs)
scaffold0037 (250-298)||(87092-87140)
[»] scaffold0022 (2 HSPs)
scaffold0022 (250-298)||(36626-36674)
scaffold0022 (250-298)||(134686-134734)


Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Complemental strand, 10878982 - 10878403
Alignment:
Q  8 atgatgtgactatacattt-actcttccaccaaaaaacctgagtagcatttccattgaaaaattgagatttcttagagtagctgtcattttcaactttgg 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878982 atgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaaattgagatttcttagagtagctgtcattttcaactttgg 10878883  T
Q  107 aagtgttgtaatcatagtagacagttgcatggtggtttctccctgaactgctaggaacattttctaaggacatatttttctcactagatcttcttatatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878882 aagtgttgtaatcatagtagacagttgcatggtggtttctccctgaagtgctaggaacattttctaaggacatatttttctcactagatcttcttatatg 10878783  T
Q  207 gcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttggcggttt 306  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10878782 gcacggttaagtggcagcacacagaccgtgctctgataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggttt 10878683  T
Q  307 ctttttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtccgaatgtatgcagtagaaaacggaactcaaagataaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  10878682 ctttttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtctgaatgcatgcagtagaaaacggaactcaaagataaa 10878583  T
Q  407 gagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcacta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878582 gagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcacta 10878483  T
Q  507 taatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaactacgagatactttt 585  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  10878482 taatcactctggattacaaattgttcaaggactcttccaaaagacttctcaatgctcaagaacaactacaagatactttt 10878403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 414 - 511
Target Start/End: Original strand, 10917628 - 10917724
Alignment:
Q  414 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcactataatc 511  Q
    ||||||| | |||| ||||||| ||||||||||||  ||||||||| |||||| ||||||| ||||||||||| |||||||| ||||||| |||||||    
T  10917628 agagagaaagagcagacacaaa-aaattttatactagttcctcccacaacacaggagtagtccagtcccttgctcttccaagggatttcattataatc 10917724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 14954593 - 14954655
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  14954593 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 14954655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 20736690 - 20736632
Alignment:
Q  452 tcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataa 509  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||    
T  20736690 tcctcccataacacatgagtagtccagtccccttgcactttcaagggatttcactataa 20736632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 15332076 - 15332014
Alignment:
Q  412 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagt 474  Q
    |||||||||||||||| ||| |||| |||||||||||  ||||||||| ||||||||| ||||    
T  15332076 agagagagagaaagcagacaaaaagcaattttatactggttcctcccacaacacatgattagt 15332014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 12727196 - 12727148
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  12727196 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 12727148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 12964046 - 12963998
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  12964046 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 12963998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 19250349 - 19250301
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttt 297  Q
    |||||||||||||||| |||| |||| ||||||||||||||| ||||||    
T  19250349 ctgaaggtgagaaaaacacaagaagaggggttgaattgtgttagctttt 19250301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 21639249 - 21639193
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||| ||||||||||| |||| |||  |||||||||||||||||||||||    
T  21639249 ataccaattgatggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 21639193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 20747374 - 20747315
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataa 509  Q
    ||||||||||||||||  |||||| ||||||| |||||||| |||| |||||||||||||    
T  20747374 ttcctcccataacacaaaagtagtccagtccccttgcactttcaagggatttcactataa 20747315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 4433150 - 4433204
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  4433150 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 4433204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 565
Target Start/End: Original strand, 10922909 - 10923005
Alignment:
Q  468 gagtagttcagtcccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcca-gagacttctcaatgctcaag 565  Q
    ||||||| ||||| ||||||||| |||| ||||||| ||||||| | | | ||||||| ||| ||||| ||||||||| || |||||||||||||||||    
T  10922909 gagtagtccagtctcttgcactttcaagggatttcattataatctcacag-attacaa-ttgctcaagtactcttccaagaaacttctcaatgctcaag 10923005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 564
Target Start/End: Complemental strand, 16201919 - 16201793
Alignment:
Q  438 aattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactc-tggattacaagttgttcaag 535  Q
    |||||||||||  ||| ||| | |||||| ||||| | ||||||| ||||||||||||| |||||||||||||  | || |  ||||| || ||||||||    
T  16201919 aattttatactggttcatcctacaacacaggagtaatccagtccccttgcacttccaagggatttcactataa--attcataaattac-agatgttcaag 16201823  T
Q  536 gactcttcc-agagacttctcaatgctcaa 564  Q
    ||||||||| |||||||||||||| |||||    
T  16201822 gactcttccaagagacttctcaattctcaa 16201793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 3237890 - 3237939
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  3237890 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 3237939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 542
Target Start/End: Complemental strand, 4768281 - 4768221
Alignment:
Q  481 ccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactctt 542  Q
    ||||||||||||||| ||||||||||||||| | || ||||||||  || ||||||||||||    
T  4768281 ccttgcacttccaagagatttcactataatctcactagattacaa-atgctcaaggactctt 4768221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 11073624 - 11073695
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttggcggtttctttttctgagtgttta 323  Q
    ||||||||||||||| |||| |||  |||||||||||||||||||||||   | ||||||||||| ||||||||    
T  11073624 tgaaggtgagaaaaacacaagaagg-gggttgaattgtgttggcttttt-ctgatttctttttctaagtgttta 11073695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 495
Target Start/End: Complemental strand, 21528775 - 21528691
Alignment:
Q  414 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacat--gagtagttcagt-cccttgcacttccaag 495  Q
    |||||||||||||| |||||||| |||||||||||  ||||||| | |||| ||   |||||| |||| ||||||||||||||||    
T  21528775 agagagagaaagcagacacaaagcaattttatactggttcctcctacaacatatagtagtagtccagtccccttgcacttccaag 21528691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 1242035 - 1241987
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||||| |||||    
T  1242035 tgaaggtgagaaaaacacaagaagtggggttgaattgtgttggtttttt 1241987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 11067442 - 11067489
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||||||    
T  11067442 tgaaggtgagaaaaacacaagaaggagg-ttgaattgtgttggcttttt 11067489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 22128299 - 22128338
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  22128299 tgaaggtgagaaaaatacaataa-aggggttgaattgtgtt 22128338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 33582415 - 33582463
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||| ||||| |||| |||  |||||||||||||||||||||||    
T  33582415 tgaaggtgataaaaacacaagaaggggggttgaattgtgttggcttttt 33582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 41494200 - 41494248
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||| |||| |||| |||  |||||||||||||||||||||||    
T  41494200 tgaaggtgagcaaaacacaagaagcggggttgaattgtgttggcttttt 41494248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 250 - 585
Target Start/End: Original strand, 18565166 - 18565500
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggc-tttttggcggtttctttttctgagtgtttataaaaacctggtcagaatctgatgt 348  Q
    ||||||||||||||| |||| |||  |||||||||||||||||| |||||| || ||||||||||| |||||| || ||||||| |||||||||||||||    
T  18565166 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcctttttgacgatttctttttctaagtgttcattaaaacctagtcagaatctgatgt 18565265  T
Q  349 tatagattctgactcggagtccgaatgtatgcagtagaaaacggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatact 448  Q
    |  |||||||||||| ||||  |||||    |||  || |||  ||  | ||||||||||||| |||||||||||| || |||||||| |||||||||||    
T  18565266 tgcagattctgactcagagtttgaatg----cagcggataacataaaaccaagataaagagtccgagagagagaaaacagacacaaagcaattttatact 18565361  T
Q  449 ctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-ag 546  Q
      ||||||||| |||||| ||||||| |||| |||||||| ||||||  |||||||||||||||||| |||||||||| ||| |||||||| || || ||    
T  18565362 agttcctcccacaacacaagagtagtccagtccccttgcatttccaatggatttcactataatcactatggattacaacttgctcaaggacactaccaag 18565461  T
Q  547 agacttctcaatgctcaagaacaactacgagatactttt 585  Q
    |||||||||  |||||||| |||||| | ||| ||||||    
T  18565462 agacttctctttgctcaagcacaactgcaagagactttt 18565500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 451 - 572
Target Start/End: Original strand, 21838307 - 21838430
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtcccttgc-acttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttc-cagag 548  Q
    ||||||||| || ||| |||||||  |||||||| | ||||||||| |||||||| | |||||||||||||||||| ||  |||||| |||||| |||||    
T  21838307 ttcctcccacaagacaggagtagtctagtccctttccacttccaagagatttcaccagaatcactctggattacaaatttctcaagggctcttctcagag 21838406  T
Q  549 acttctcaatgctcaagaacaact 572  Q
    |||||||| |||||||| ||||||    
T  21838407 acttctcagtgctcaagcacaact 21838430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 564
Target Start/End: Original strand, 5825265 - 5825379
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagaga 549  Q
    ||||| ||| |||||||||||||| ||||||| || ||||| || | |||||||||||||||||||| |||||||| ||| |||||||  |  | |||||    
T  5825265 ttccttccacaacacatgagtagtccagtcccctttcactttcaggggatttcactataatcactctcgattacaacttgctcaaggatacaccaagaga 5825364  T
Q  550 cttctcaatgctcaa 564  Q
     ||||||||||||||    
T  5825365 attctcaatgctcaa 5825379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 513
Target Start/End: Original strand, 13644627 - 13644727
Alignment:
Q  414 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatca 512  Q
    |||||||||||| | ||| |||  |||| ||||||  ||||||||| |||||| ||||||| |||||| ||||||||| |||| ||||||||||||||||    
T  13644627 agagagagaaaggagacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatca 13644726  T
Q  513 c 513  Q
    |    
T  13644727 c 13644727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 513
Target Start/End: Original strand, 13745052 - 13745152
Alignment:
Q  414 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatca 512  Q
    |||||||||||| | ||| |||  |||| ||||||  ||||||||| |||||| ||||||| |||||| ||||||||| |||| ||||||||||||||||    
T  13745052 agagagagaaaggagacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatca 13745151  T
Q  513 c 513  Q
    |    
T  13745152 c 13745152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 545
Target Start/End: Complemental strand, 23433703 - 23433596
Alignment:
Q  438 aattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaagg 536  Q
    ||||||||| |  ||||||||| |||||| ||||||| |||| |||||||||||||||| |||||||||||||| || |  ||||||||  || ||||||    
T  23433703 aattttatagtggttcctcccacaacacaggagtagtccagttcccttgcacttccaagggatttcactataataacacatgattacaa-atgctcaagg 23433605  T
Q  537 actcttcca 545  Q
    |||||||||    
T  23433604 actcttcca 23433596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 17287138 - 17287076
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  17287138 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 17287076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 20310890 - 20310951
Alignment:
Q  208 cacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaa 269  Q
    |||||||||||||||  | |||||  |||||||||||||||| |||||||||||||||||||    
T  20310890 cacggttaagtggcaaaatacagattgtgctctaataccaaccgaaggtgagaaaaatacaa 20310951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 21097523 - 21097584
Alignment:
Q  208 cacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaa 269  Q
    |||||||||||||||  | |||||  |||||||||||||||| |||||||||||||||||||    
T  21097523 cacggttaagtggcaaaatacagattgtgctctaataccaaccgaaggtgagaaaaatacaa 21097584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 583
Target Start/End: Complemental strand, 211506 - 211410
Alignment:
Q  488 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaactacgagatactt 583  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||| ||||||||| | ||||||||| |||||||| ||||||||    
T  211506 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 583
Target Start/End: Original strand, 240750 - 240846
Alignment:
Q  488 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaactacgagatactt 583  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||| ||||||||| | ||||||||| |||||||| ||||||||    
T  240750 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 240846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 583
Target Start/End: Complemental strand, 725129 - 725033
Alignment:
Q  488 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaactacgagatactt 583  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||| ||||||||| | ||||||||| |||||||| ||||||||    
T  725129 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 725033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 583
Target Start/End: Original strand, 794105 - 794201
Alignment:
Q  488 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaactacgagatactt 583  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||| ||||||||| | ||||||||| |||||||| ||||||||    
T  794105 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 794201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 565
Target Start/End: Complemental strand, 20267937 - 20267854
Alignment:
Q  483 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaag 565  Q
    ||||||||||||| |||||||||||| |||| |  |||||||| ||  |||||||| ||||| ||||||||||||||| |||||    
T  20267937 ttgcacttccaagggatttcactatagtcacacaagattacaaattactcaaggacacttccaagagacttctcaatgttcaag 20267854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 565
Target Start/End: Complemental strand, 21054566 - 21054483
Alignment:
Q  483 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaag 565  Q
    ||||||||||||| |||||||||||| |||| |  |||||||| ||  |||||||| ||||| ||||||||||||||| |||||    
T  21054566 ttgcacttccaagggatttcactatagtcacacaagattacaaattactcaaggacacttccaagagacttctcaatgttcaag 21054483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 30422392 - 30422343
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| |||| |||| ||||||||||||||| |||||||    
T  30422392 ctgaaggtgagaaaaacacaagaagaggggttgaattgtgtttgcttttt 30422343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 18676839 - 18676895
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  18676839 ataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 18676895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 22672960 - 22673015
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  22672960 ataccaattgaaggtgagaaaaacacaagaagg-gggttgaattgtgttggcttttt 22673015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 23586790 - 23586730
Alignment:
Q  466 atgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaa 525  Q
    ||||||||||||||||| |||||||||||||   ||||||||||||||| || ||||||||    
T  23586790 atgagtagttcagtccccttgcacttccaaggattttcactataatcacactagattacaa 23586730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 40846365 - 40846317
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||||||    
T  40846365 tgaaggtgagaaaaatacaagaaggggggttgaattgtgttagcttttt 40846317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 23587046 - 23586996
Alignment:
Q  250 tgaaggtgagaaaaa--tacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  23587046 tgaaggtgagaaaaacgtacaataagaaaagttgaattgtgttggcttttt 23586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 5825124 - 5825193
Alignment:
Q  305 ttctttttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtccgaatg 375  Q
    |||||| ||| ||||||||||||| ||||||||  ||||||||||  |||||||||||| ||||| |||||    
T  5825124 ttctttatctaagtgtttataaaa-cctggtcaacatctgatgttgcagattctgactcagagtctgaatg 5825193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 1210661 - 1210613
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  1210661 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 1210613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 13431579 - 13431531
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  13431579 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 13431531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 19942418 - 19942474
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||||| || ||   |||||||||| ||||||||||||    
T  19942418 ataccaattgaaggtgagaaaaatataagaatgggggttgaattatgttggcttttt 19942474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 27739070 - 27739117
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||||||    
T  27739070 tgaaggtgagaaaaatacaagaag-ggggttgaattgtgttagcttttt 27739117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 43773308 - 43773356
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  43773308 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 43773356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 397 - 572
Target Start/End: Complemental strand, 19143592 - 19143415
Alignment:
Q  397 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaag 495  Q
    ||||||||||||| || |||||||||||| | ||||| || ||||||||||   ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  19143592 caaagataaagagacaaagagagagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaag 19143493  T
Q  496 cgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaact 572  Q
     |||||||||||||||||||| |||||||| ||  |||||||||||||| ||||| ||||||||||||||| ||||||    
T  19143492 ggatttcactataatcactctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaact 19143415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 397 - 572
Target Start/End: Complemental strand, 20742991 - 20742814
Alignment:
Q  397 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaag 495  Q
    ||||||||||||| || |||||||||||| | ||||| || ||||||||||   ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  20742991 caaagataaagagacaaagagagagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaag 20742892  T
Q  496 cgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaact 572  Q
     |||||||||||||||||||| |||||||| ||  |||||||||||||| ||||| ||||||||||||||| ||||||    
T  20742891 ggatttcactataatcactctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaact 20742814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 564
Target Start/End: Original strand, 19414083 - 19414168
Alignment:
Q  480 cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaa 564  Q
    |||||||||||||||| |||||||||||||||| ||| |||||||| ||  |||||||| || || ||||||||||||||||||||    
T  19414083 cccttgcacttccaagggatttcactataatcaatcttgattacaattttctcaaggacactcccaagagacttctcaatgctcaa 19414168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 565
Target Start/End: Original strand, 20052478 - 20052865
Alignment:
Q  183 tttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaaggg---- 278  Q
    ||||||||||| |||| |||| ||||||||||| ||| |||  |||| | |  |||||||||| |||| ||||||||||| | ||| || ||||||        
T  20052478 tttctcactagttctttttatgtggcacggttaggtgacagagcacataacaggctctaatacaaactaaaggtgagaaacacaca-taggaaggggggg 20052576  T
Q  279 ttgaattgtgttggctttttggcggtttctttttctgagtgttta-taaaaacctggtcagaatctgatgttatagattctgactcggagtccgaatgta 377  Q
    ||||||||||  | ||||||| |||||||||||||| || ||||| || |  | ||| ||||||||||||||  |||||||||||| ||||| |  ||||    
T  20052577 ttgaattgtg--gcctttttgacggtttctttttctaagcgtttaatacagtcttggacagaatctgatgttgcagattctgactcagagtctgcttgta 20052674  T
Q  378 tgcagta-----gaaaacggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagta 472  Q
     |||| |     ||| ||  |  | ||||||||| |||| |||||||| ||  || |||||| | ||||| ||| |  ||||||||| || ||| |||||    
T  20052675 -gcagaaatacagaacacacagataaaagataaatagtccgagagagataagacaaacacaaggcaattt-atattggttcctcccacaaaacaagagta 20052772  T
Q  473 gttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagagacttctcaatgctcaag 565  Q
    ||  ||| ||||||||||||  || |||||||||||||||||| | |||||||| ||| |||||||  |  | |||||||||||||||||||||    
T  20052773 gtctagttcccttgcacttcttagggatttcactataatcact-tagattacaacttgctcaaggatacaccaagagacttctcaatgctcaag 20052865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 565
Target Start/End: Original strand, 22974597 - 22974712
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcca-gag 548  Q
    ||||||||| | || | |||||||||| |||| ||||||||||||| ||||| | |||||||   || |||||||| ||| |||||||||| |||| |||    
T  22974597 ttcctcccacagcataggagtagttcactccccttgcacttccaagggattttagtataatctaactagattacaa-ttgctcaaggactcgtccaagag 22974695  T
Q  549 acttctcaatgctcaag 565  Q
    |||||||||||||||||    
T  22974696 acttctcaatgctcaag 22974712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 9802127 - 9802196
Alignment:
Q  248 actgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttggcggtttctttttctgagt 318  Q
    ||||||||||||||||| |||| |  | ||||||||||||||||||||||| | ||||||||||| |||||    
T  9802127 actgaaggtgagaaaaacacaagattaggggttgaattgtgttggcttttt-gtggtttctttttgtgagt 9802196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 16033134 - 16033180
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttt 296  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||||    
T  16033134 tgaaggtgagaaaaacacaagaagaggggttgaattgtgttggcttt 16033180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 16557574 - 16557525
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  16557574 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 16557525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 16608088 - 16608137
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  16608088 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 16608137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 19843334 - 19843294
Alignment:
Q  308 tttttctgagtgtttataaaaacctggtcagaatctgatgtt 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  19843334 tttttctgagtgtttataaaa-cctggtcagaatctgatgtt 19843294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 33604099 - 33604147
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  33604099 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 33604147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 9761734 - 9761803
Alignment:
Q  248 actgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttggcggtttctttttctgagt 318  Q
    ||||||||||||||||| |||| | ||  ||||||||||||||| |||||| | ||||||||||| |||||    
T  9761734 actgaaggtgagaaaaaaacaagatgagtggttgaattgtgttgacttttt-gtggtttctttttgtgagt 9761803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 13263017 - 13263071
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||||||||||||||||| | |||||||| | |||| |||||||||    
T  13263017 gctctgataccaactgaaggtgagaaacacacaataaggatggttcaattgtgtt 13263071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 17916931 - 17916977
Alignment:
Q  253 aggtgagaaaaatacaataagaagggttgaattgtgttggctttttg 299  Q
    |||||||||||| |||| |||| ||||||||||||||||||| ||||    
T  17916931 aggtgagaaaaacacaagaagatgggttgaattgtgttggctatttg 17916977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 18440570 - 18440624
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  18440570 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 18440624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 13027927 - 13027866
Alignment:
Q  237 ctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||| ||||||| ||||||||||||||| |||| |||   |||||||||||||| |||||||    
T  13027927 ctctgataccaattgaaggtgagaaaaacacaagaagggaggttgaattgtgtttgcttttt 13027866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 13138889 - 13138840
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  13138889 tgaaggtgagaaaaacacaagaagagggggttgaattgtgttggcttttt 13138840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 4493739 - 4493787
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  4493739 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 4493787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 10884133 - 10884085
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  10884133 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 10884085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 23125160 - 23125204
Alignment:
Q  254 ggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||| |||| ||| |||||||||||||||| |||||||    
T  23125160 ggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 23125204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 412 - 545
Target Start/End: Complemental strand, 2401 - 2267
Alignment:
Q  412 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataat 510  Q
    ||||||||||| |||| ||| ||||||||||||||||  ||||||||| |||| |||||||||  |||||| ||||||||||||  ||||||||||||||    
T  2401 agagagagagagagcagacaaaaagaaattttatactggttcctcccagaacatatgagtagtctagtccccttgcacttccaaaagatttcactataat 2302  T
Q  511 cactctggattacaagttgttcaaggactcttcca 545  Q
    ||||||||||||||| ||| |||||||||||||||    
T  2301 cactctggattacaaattgctcaaggactcttcca 2267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 2776 - 2659
Alignment:
Q  181 tttttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaa-gggt 279  Q
    ||||||||||| ||||||  | | ||| || ||||||||||||  || | ||||| |||| ||||||||||||||||||||||| |||  ||||| ||||    
T  2776 tttttctcactggatctttatctgtggtacagttaagtggcagagcatataccgtactctgataccaactgaaggtgagaaaaacacatgaagaaggggt 2677  T
Q  280 tgaattgtgttggctttt 297  Q
    ||||||||||||||||||    
T  2676 tgaattgtgttggctttt 2659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 317 - 583
Target Start/End: Original strand, 17206201 - 17206462
Alignment:
Q  317 gtgtttataaaa-acctggtcagaatctgatgttatagattctgactcggagtccgaatgtatgcagtagaaaacggaactcaaagataaagagtcagag 415  Q
    |||||||||||| | || ||||||||| |||||| ||||||||||||| ||||| |||||    |||  ||||||  ||| |||| ||||||||| ||||    
T  17206201 gtgtttataaaatatctagtcagaatcggatgttgtagattctgactcagagtctgaatg----cagcggaaaacataacacaaaaataaagagttagag 17206296  T
Q  416 agagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatcact 514  Q
    |||||  ||||| |||||  | |||||||||||  ||||||||| || | | ||||||||||| || |||||||||||||| |||||||| | |||||||    
T  17206297 agaga--aagcagacaca--gtaattttatactagttcctcccacaatataggagtagttcagcccacttgcacttccaagggatttcaccacaatcact 17206392  T
Q  515 ctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaactacgagatactt 583  Q
    ||||||||||   || |||||||||||||| || |||||||||||||||||| |||||||| ||| ||||    
T  17206393 ctggattacatactgatcaaggactcttccaagtgacttctcaatgctcaagcacaactacaagaaactt 17206462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 278 - 572
Target Start/End: Original strand, 34659189 - 34659484
Alignment:
Q  278 gttgaattgtgttggctttttggcggtttctttttctgag-tgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtccgaatgt 376  Q
    ||||||||||||||||||| ||  |||||||||||||  | |||| |||| ||||||||||||||||  ||||  ||||||| |||| ||||| |||||     
T  34659189 gttgaattgtgttggctttatgaaggtttctttttctttggtgttaataataacctggtcagaatctcttgttgcagattctaactcagagtctgaatg- 34659287  T
Q  377 atgcagtagaaaacg-gaactcaaagataaagagtcagagagagagaaagcatacacaaagaaatttt-atactctttcctcccataacacatgagtagt 474  Q
       |||| || ||   |||| ||||| ||||||||||||||||  ||||||| |||||||| | |||| |||||  ||||||||| |||||| |||||||    
T  34659288 ---cagtggataattagaacacaaagttaaagagtcagagagaaggaaagcagacacaaagtagtttttatactggttcctcccacaacacaagagtagt 34659384  T
Q  475 tcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcca-gagacttctcaatgctcaagaacaact 572  Q
     ||||||| ||| ||||| ||| |||||||||||||||||| ||||||||   ||| |||||||| |||||| ||||||||||  || ||||| ||||||    
T  34659385 ccagtccccttgtacttctaagggatttcactataatcactatggattacgcattgctcaaggacacttccaggagacttctctttgttcaagcacaact 34659484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 481 - 572
Target Start/End: Complemental strand, 27167397 - 27167307
Alignment:
Q  481 ccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagagacttctcaatgctcaagaacaact 572  Q
    ||||| ||||| ||| |||||||||||||||||| |||||||||| ||| | |||||| |  | ||||||||||||||||||||||||||||    
T  27167397 ccttggacttctaagggatttcactataatcact-tggattacaatttgcttaaggacacaccaagagacttctcaatgctcaagaacaact 27167307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 583
Target Start/End: Original strand, 20396335 - 20396451
Alignment:
Q  468 gagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagagacttctcaatgctcaaga 566  Q
    ||||||| |||| |||||||||||||||| ||||| | ||||| || ||| |||||||| ||| ||||||||    | |||||||||||||||||||||     
T  20396335 gagtagtccagtacccttgcacttccaagggattttagtataaccaatcttgattacaatttgctcaaggacatagcaagagacttctcaatgctcaagt 20396434  T
Q  567 acaactacgagatactt 583  Q
    |||||| ||||| ||||    
T  20396435 acaactgcgagagactt 20396451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 483 - 572
Target Start/End: Original strand, 19730888 - 19730978
Alignment:
Q  483 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaact 572  Q
    ||||| ||||||| ||||||||||||||| | | ||||||||| ||| | |||||| ||||| ||||||||||| ||||||||| ||||||    
T  19730888 ttgcatttccaagggatttcactataatctcacaggattacaaattgattaaggacacttccaagagacttctctatgctcaagcacaact 19730978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 10481542 - 10481603
Alignment:
Q  451 ttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatc 511  Q
    ||||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||||||||    
T  10481542 ttcctcccacaacacaggagtagttcagtccccttgcatttccaagggatttcactataatc 10481603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 11129932 - 11129995
Alignment:
Q  234 gtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||| |||||||||| ||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  11129932 gtgctttaataccaacagaaggtgagaaaaatacaagaag-atggttgaattgcgttggcttttt 11129995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 19122481 - 19122548
Alignment:
Q  397 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataaca 464  Q
    ||||||||||||| || |||||||||||||| |||||||| | |||||||||  ||||||||| ||||    
T  19122481 caaagataaagagacacagagagagaaagcagacacaaagcacttttatactagttcctcccacaaca 19122548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 13435072 - 13435128
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  13435072 ataccaattgaaggtgagaaaaaaacaagaaggggggttgaattgtgtttgcttttt 13435128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 32543458 - 32543506
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  32543458 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 32543506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 8868958 - 8868903
Alignment:
Q  243 taccaactgaaggtgagaaaaatacaataaga-agggttgaattgtgttggctttt 297  Q
    ||||||||||||||||||||||||||| |||| | | |||||||||||| ||||||    
T  8868958 taccaactgaaggtgagaaaaatacaagaagagatgattgaattgtgttagctttt 8868903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 28252420 - 28252366
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  28252420 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 28252366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 15301412 - 15301461
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  15301412 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 15301461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 15532585 - 15532536
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaa-gggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||||| ||||||||||||||| |||||||    
T  15532585 tgaaggtgagaaaaacacaagaagaaggggttgaattgtgttagcttttt 15532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 583
Target Start/End: Complemental strand, 21689581 - 21689464
Alignment:
Q  468 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaag 565  Q
    ||||||| ||||||| || |||||||||| |||||||||||||||||    |||||||| ||| |||| |||  |||| ||||||||  | |||||||||    
T  21689581 gagtagtccagtccccttccacttccaagggatttcactataatcacaactgattacaaattgctcaaagacatttccaagagacttgcctatgctcaag 21689482  T
Q  566 aacaactacgagatactt 583  Q
     |||||||| ||| ||||    
T  21689481 cacaactacaagagactt 21689464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 12041053 - 12041101
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||||  ||||||||||||||| ||||||    
T  12041053 tgaaggtgagaaaaacacaagaagagtggttgaattgtgttgacttttt 12041101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 17446601 - 17446553
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||||||||||||||||||||| |||| ||  | ||||||||||||||    
T  17446601 ataccaactgaaggtgagaaaaacacaagaaagaaggttgaattgtgtt 17446553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 19085327 - 19085375
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||| |||||| |||| |||  |||||||||||||||||||||||    
T  19085327 tgaaggtgtgaaaaacacaagaaggggggttgaattgtgttggcttttt 19085375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 418 - 572
Target Start/End: Original strand, 22747771 - 22747926
Alignment:
Q  418 agagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactct 516  Q
    |||||||||| ||||||||  |||| ||| |  |||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||| ||       
T  22747771 agagaaagcagacacaaagcgattt-atattggttcctcccataacacaagagtagtccagtccccttgcacttccaagggatttcactataataacata 22747869  T
Q  517 ggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaact 572  Q
    ||||||||| ||  |||||||||||||| ||||||||||||||||||||| ||||||    
T  22747870 ggattacaaatttctcaaggactcttccaagagacttctcaatgctcaagcacaact 22747926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 250 - 516
Target Start/End: Original strand, 18303561 - 18303828
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaaggg----ttgaattgtgttggc-tttttggcggtttctttttctgagtgtttataaaaacctggtcagaatctg 344  Q
    ||||||||||||||| ||| |||||||||    || |||||||||||| |||||| || ||||||||||| |||||| |||| ||||||  || ||| ||    
T  18303561 tgaaggtgagaaaaacaca-taagaagggaaggttaaattgtgttggcctttttgacgttttctttttctaagtgttaataacaacctgtacaaaatttg 18303659  T
Q  345 atgttatagattctgactcggagtccgaatgtatgcagtagaaa-acggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaatttt 443  Q
    |||||  |||||| ||||| ||||| |||||    ||   |||| ||  ||| |||||||||||||| ||| ||||||||  |||||| |||| |||||     
T  18303660 atgttgcagattccgactcagagtctgaatg----caacggaaatacataacacaaagataaagagtaagatagagagaagacatacataaagcaattt- 18303754  T
Q  444 atactctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactct 516  Q
    ||| |  |||||||||||||||||||||||   ||| |||||  ||||| ||| ||||||||||||||||||||    
T  18303755 atattggttcctcccataacacatgagtagccgagtccccttatacttctaagggatttcactataatcactct 18303828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 538
Target Start/End: Complemental strand, 12063555 - 12063264
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaaggg--ttgaattgtgttggc---tttttggcggtttctttttctgagtgtttataaaaacctggtcagaatctg 344  Q
    ||||||||||||||| |||  ||||||||  |||||||||||||||   |||||| || ||||||||||| |||||| |||| |||||||  ||||||||    
T  12063555 tgaaggtgagaaaaacacac-aagaagggggttgaattgtgttggcgtctttttgacgttttctttttcttagtgttaataacaacctggatagaatctg 12063457  T
Q  345 atgttatagattctgactcggagtccgaatgtatgcagt-agaaaacggaactcaaagataaagagtcagagagagag--aaagcatacacaaagaaatt 441  Q
    ||||| | |||||||| || |||||    || |||||||  |||  |  ||| |||| ||||| ||||||||||||||  ||| || |||||||  || |    
T  12063456 atgttgtggattctgattcagagtc----tgaatgcagtgggaatgcataacacaaaaataaaaagtcagagagagagaaaaaacaaacacaaaccaa-t 12063362  T
Q  442 ttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggac 538  Q
    |||| |   || || ||| |||||| ||||| | |||||| ||||||||| |||| |||||||||||||||||||| |||||||| ||  ||||||||    
T  12063361 ttattccggtttctgccacaacacaggagtactccagtcctcttgcactttcaagggatttcactataatcactctagattacaacttactcaaggac 12063264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 553
Target Start/End: Original strand, 9823621 - 9823776
Alignment:
Q  398 aaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagc 496  Q
    |||||||||||| ||||||||||  ||||| ||| |||  |||||||||||  ||||||||| ||||||  |||||| ||  ||| |||||||| ||||     
T  9823621 aaagataaagagacagagagaga--aagcagacataaaacaattttatactgattcctcccacaacacagaagtagtccaacccccttgcactttcaagg 9823718  T
Q  497 gatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttc 553  Q
    ||||||||||| ||||| |  |||||||| ||| |||||||| ||||| |||||||||    
T  9823719 gatttcactatcatcacacatgattacaaattgctcaaggacacttccaagagacttc 9823776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 565
Target Start/End: Complemental strand, 24885931 - 24885850
Alignment:
Q  483 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagagacttctcaatgctcaag 565  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||| | |||||| |  | |||||||||||||||||||||    
T  24885931 ttgcacttccaagggatttcactataatcactct-gattacaatttgcttaaggacacaccaagagacttctcaatgctcaag 24885850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 537
Target Start/End: Complemental strand, 19570385 - 19570263
Alignment:
Q  416 agagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcact 514  Q
    ||||||||||||   |||||| ||||||||| |  ||||||||| |||| | ||||||| ||||| | |||||||| |||  ||||||||||||||||||    
T  19570385 agagagaaagcaggaacaaaggaattttatatttgttcctcccacaacagaggagtagtccagtctcattgcactttcaatggatttcactataatcact 19570286  T
Q  515 ctggattacaagttgttcaagga 537  Q
    ||  ||||||| ||| |||||||    
T  19570285 ctaaattacaaattgctcaagga 19570263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 441 - 565
Target Start/End: Complemental strand, 24495249 - 24495125
Alignment:
Q  441 tttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggact 539  Q
    ||||||||  ||||||||| |||||| ||||||| ||||||| |||||||| |||| ||||||| ||||||| | || |||||||| ||| ||| |||||    
T  24495249 tttatactggttcctcccacaacacaagagtagtccagtccccttgcactttcaagggatttcattataatctcact-gattacaa-ttgctcagggact 24495152  T
Q  540 cttcc-agagacttctcaatgctcaag 565  Q
    ||||| |||||||||  ||||||||||    
T  24495151 cttccaagagacttccaaatgctcaag 24495125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 451 - 545
Target Start/End: Complemental strand, 24515576 - 24515483
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcca 545  Q
    ||||||||| |||||| ||||||| |||||||| ||||||||||| || ||||||||||||   ||  ||||||| ||| |||||||||||||||    
T  24515576 ttcctcccacaacacaggagtagtccagtccctagcacttccaagggagttcactataatcttactaaattacaa-ttgctcaaggactcttcca 24515483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 28759885 - 28759970
Alignment:
Q  479 tcccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagagacttctcaatgctcaa 564  Q
    ||||||| |||||||||  ||||||||||||||| ||| |||||||| ||| | |||||| |  | ||||||||||||||||||||    
T  28759885 tcccttgtacttccaaggaatttcactataatcaatcttgattacaatttgcttaaggacacaccaagagacttctcaatgctcaa 28759970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 33021842 - 33021893
Alignment:
Q  247 aactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  33021842 aactgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 33021893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 9088174 - 9088223
Alignment:
Q  250 tgaaggtgagaaaaatacaataag-aagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  9088174 tgaaggtgagaaaaacacaagaaggaagggttgaattgtgttggcttttt 9088223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 19642764 - 19642716
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||| ||| |||||||||||||||||||    
T  19642764 tgaaggtgagaaaaacacaagaagaggggatgaattgtgttggcttttt 19642716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 21199961 - 21199905
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  21199961 ataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 21199905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 31589936 - 31589888
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| ||||||||  ||||||||||||||| |||||||    
T  31589936 tgaaggtgagaaaaacacaataaggggggttgaattgtgttagcttttt 31589888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 572
Target Start/End: Original strand, 12046681 - 12046752
Alignment:
Q  502 cactataatcactctggattacaagttgttcaaggac-tcttccagagacttctcaatgctcaagaacaact 572  Q
    ||||||||||||||| |||| | | |||||||||||| | ||| |||||||||||||| |||||| ||||||    
T  12046681 cactataatcactctagattgctaattgttcaaggactttttcaagagacttctcaatactcaagcacaact 12046752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 13533162 - 13533216
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  13533162 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 13533216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 17456607 - 17456661
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  17456607 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 17456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 6513373 - 6513324
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||| |||| ||||||||||||||||||||    
T  6513373 tgaaggtgagaaaaacacaagaaggaggggttgaattgtgttggcttttt 6513324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 19570549 - 19570501
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  19570549 ctgaaggtgagaaaaatacaagaagga-ggttgaattgagttggcttttt 19570501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 22820779 - 22820859
Alignment:
Q  465 catgagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcca 545  Q
    ||||| |||| |||||| |||||||||||||| |||||| |||||||| | || |||||||| |||||||| ||| ||||||    
T  22820779 catgactagtccagtcctcttgcacttccaagagatttcgctataatctcactagattacaa-ttgttcaaagacacttcca 22820859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 31487403 - 31487451
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||||| |||||    
T  31487403 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggtttttt 31487451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 42242815 - 42242859
Alignment:
Q  254 ggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||| |||| |||  |||||||||||||||||||||||    
T  42242815 ggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 42242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 416 - 575
Target Start/End: Complemental strand, 30761 - 30600
Alignment:
Q  416 agagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcact 514  Q
    |||||||||||| |||||||  ||||||||| |  ||||||||  || | | ||||||| || |||| ||||||||||||| | |||||||||||| |||    
T  30761 agagagaaagcaaacacaaatcaattttatattggttcctccctcaaaaaaggagtagtccaatccccttgcacttccaaggggtttcactataattact 30662  T
Q  515 ctggattacaagttgttcaaggactcttccag-agacttctcaatgctcaagaacaactacg 575  Q
     |||||||||| ||| ||||||||||||| || ||||||||||||||||||| |||||||||    
T  30661 ttggattacaaattgctcaaggactcttctagtagacttctcaatgctcaagcacaactacg 30600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 414 - 572
Target Start/End: Complemental strand, 18233 - 18073
Alignment:
Q  414 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtc-ccttgcacttccaagcgatttcactataatca 512  Q
    ||||| |||||||||| | |||  ||||||||| |  ||||||| | |||| | |||||||  |||| ||||| ||||||||| | ||||||||||||||    
T  18233 agagaaagaaagcatagataaatcaattttatattggttcctcctacaacaaaggagtagtcgagtctccttgtacttccaagaggtttcactataatca 18134  T
Q  513 ctctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaact 572  Q
    |||||||||| || ||| |||||||||||||| ||| ||||||| ||||||||| ||||||    
T  18133 ctctggattaaaaattgctcaaggactcttccaagatacttctctatgctcaagcacaact 18073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 31786 - 31834
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  31786 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 31834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 397 - 572
Target Start/End: Original strand, 382128 - 382305
Alignment:
Q  397 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaag 495  Q
    |||||||||||||  | ||||||||| |||| |||||||  |||  ||||||  ||||| ||| |||||| ||||||| || |||| ||||| ||| |||    
T  382128 caaagataaagagatatagagagagatagcagacacaaaacaatcatatactagttccttccacaacacaggagtagtccactccccttgcagttctaag 382227  T
Q  496 cgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaact 572  Q
     |||||||||||||||||||  |||||||| ||| |||||||||||||| |||||||||| |||||||||| ||||||    
T  382228 agatttcactataatcactcatgattacaaattgctcaaggactcttccaagagacttcttaatgctcaagcacaact 382305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 382010 - 382074
Alignment:
Q  278 gttgaattgtgttggctttttggcggtttctttttctgagtgtttataaaaacctggtcagaatctga 345  Q
    ||||||||||||||| |||||| | |||||||||||||||||||  ||||||| ||||||||||||||    
T  382010 gttgaattgtgttggttttttg-cagtttctttttctgagtgtt--taaaaacttggtcagaatctga 382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 210595 - 210650
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  210595 ataccaattgaaggtgagaaaaacacaagaagg-gggttgaattgtgttggcttttt 210650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 397 - 570
Target Start/End: Original strand, 25067 - 25240
Alignment:
Q  397 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaag 495  Q
    ||||||||||||| |||||||| |  ||||| |||||||  ||||||||| |  ||||||||| || | | ||||||| || |||| |||||||||||||    
T  25067 caaagataaagagacagagagaca--aagcaaacacaaaacaattttatattggttcctcccacaataaaggagtagtccaatccccttgcacttccaag 25164  T
Q  496 cgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaa 570  Q
     | |||||||||||||||| |||||||||| ||| |||||||||||||| | |||||||| |||||||||| ||||    
T  25165 gggtttcactataatcactttggattacaaattgctcaaggactcttccaatagacttcttaatgctcaagcacaa 25240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 392 - 546
Target Start/End: Complemental strand, 22317478 - 22317323
Alignment:
Q  392 gaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcactt 490  Q
    |||| ||||||||||||| |  |  ||||||||| | |||||||  |||||||||||  ||||||| | ||  || ||||||| ||||| | ||||||||    
T  22317478 gaacacaaagataaagagacgaaacgagagaaagtagacacaaaacaattttatactggttcctcctacaatccaggagtagtccagtctcattgcactt 22317379  T
Q  491 ccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccag 546  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  22317378 ccaagggatttcactataatcactctggattacaaattgctcaaggacacttccag 22317323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 209 - 539
Target Start/End: Original strand, 8910812 - 8911134
Alignment:
Q  209 acggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttggcggtttct 308  Q
    ||||||||||||||   || ||| |||| ||| |||||||||  |||||||||||| |||| | |  |||||||||||||||||||||||   |||||||    
T  8910812 acggttaagtggcaaagcatagatcgtgttctgataccaacttgaggtgagaaaaacacaaaagg--gggttgaattgtgttggcttttt-atggtttct 8910908  T
Q  309 ttttctgagtgtttataaaaacctggtcagaatctgatgt-tatagattctgactcggagtccgaatgtatgcag-tagaaaacggaactcaaagataaa 406  Q
    |||||||| ||||   ||||||||||||| |||||||||| |  | |||||||||| ||||   |||||| |||| || ||||   ||| |||| ||||     
T  8910909 ttttctgaatgtt--gaaaaacctggtcaaaatctgatgtatgaatattctgactcagagtgttaatgta-gcagataaaaaaaaaaacacaaatataag 8911005  T
Q  407 gagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcacta 506  Q
    |||||  |||||||||||| | ||||||   || ||||||||  ||||||||| |||||| ||||| | ||| ||||| |||||| ||| ||||||||||    
T  8911006 gagtc--agagagagaaagtagacacaa--taactttatactggttcctcccacaacacaggagtaatccagccccttacacttctaagggatttcacta 8911101  T
Q  507 taatcactctggattacaagttgttcaaggact 539  Q
    ||||||| |  |||||||| ||| || ||||||    
T  8911102 taatcacacaagattacaaattgctctaggact 8911134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 565
Target Start/End: Complemental strand, 22223554 - 22223402
Alignment:
Q  414 agagagagaaagcatacacaaaga-aattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatc 511  Q
    ||||||||||||   ||||||| | |||||||||||  ||||||||| |||||| |||||||  ||||| |||||||||||||| |||||||||||||||    
T  22223554 agagagagaaagagcacacaaaaacaattttatactggttcctcccacaacacaggagtagtcaagtcctcttgcacttccaagggatttcactataatc 22223455  T
Q  512 actctggattacaagttgttcaaggactcttcca-gagacttctcaatgctcaag 565  Q
     | |   ||||||| ||| | ||||||||||||| |||||||| |||||||||||    
T  22223454 tcac-atattacaa-ttgctgaaggactcttccacgagacttcccaatgctcaag 22223402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 451 - 565
Target Start/End: Original strand, 18445318 - 18445432
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agag 548  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||| |||||  |||||||| | |  |||||||| ||| |||||||||||||| ||||    
T  18445318 ttcctcccagaacacatgagtagtccagtcctcttgcacttccaagggattttcctataatctcac-agattacaa-ttgctcaaggactcttccaagag 18445415  T
Q  549 acttctcaatgctcaag 565  Q
    |||||  ||||||||||    
T  18445416 acttccaaatgctcaag 18445432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 21810819 - 21810747
Alignment:
Q  226 cacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||| ||||||||| |||||||||||||||||||||||| | || |||  |||||||||||||||| ||||||    
T  21810819 cacaaaccgtgctcaaataccaactgaaggtgagaaaaacataagaaggggggttgaattgtgttgacttttt 21810747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 18777553 - 18777480
Alignment:
Q  276 gggttgaattgtgttggctttttggcggtttctttttctgagtgtttataaaaacctggtcagaatctgatgtt 349  Q
    |||||||||||||| ||  ||||| |   |||||||||| ||||||||||||||| ||||||||||||||||||    
T  18777553 gggttgaattgtgtgggtcttttgacaaattctttttctaagtgtttataaaaacttggtcagaatctgatgtt 18777480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 564
Target Start/End: Complemental strand, 18777339 - 18777264
Alignment:
Q  489 ttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagagacttctcaatgctcaa 564  Q
    ||||||| |||||||||||||||||| || ||||||| ||| |||||||| |  | ||||| ||||||||||||||    
T  18777339 ttccaagggatttcactataatcactttgaattacaacttgctcaaggacacaccaagagatttctcaatgctcaa 18777264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 17527308 - 17527246
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||| ||||||||||||||||||||||| | || |||  ||||||||||||||| |||||||    
T  17527308 gctctgataccaactgaaggtgagaaaaacaaaagaaggcgggttgaattgtgttagcttttt 17527246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 14905256 - 14905193
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 298  Q
    ||||||||||||| |||||||| |||||| |||| |||  ||| ||||||||||||||||||||    
T  14905256 gctctaataccaattgaaggtgggaaaaacacaacaaggggggattgaattgtgttggcttttt 14905193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 538
Target Start/End: Original strand, 19052737 - 19052807
Alignment:
Q  468 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggac 538  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||| |  |||||||| ||| ||||||||    
T  19052737 gagtagtccagtccccttgcacttccaagggatttcactataatcacacaagattacaa-ttgctcaaggac 19052807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 585
Target Start/End: Complemental strand, 39981285 - 39981166
Alignment:
Q  468 gagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggac-tcttccagagacttctcaatgctcaag 565  Q
    ||||||| |||||| ||||||||||||||  |||||||||||||||    |||||||||  || |||||||| | ||| |||||||||||  ||||||||    
T  39981285 gagtagtccagtccacttgcacttccaaggaatttcactataatcataaaggattacaaaatgctcaaggacattttcaagagacttctctttgctcaag 39981186  T
Q  566 aacaactacgagatactttt 585  Q
     |||||| | ||| ||||||    
T  39981185 cacaactgcaagacactttt 39981166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 13026985 - 13027031
Alignment:
Q  252 aaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||| |||| |||  |||||||||||||||||||||||    
T  13026985 aaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 13027031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 14836953 - 14836899
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  14836953 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 14836899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 14903327 - 14903275
Alignment:
Q  245 ccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||| |||||||    
T  14903327 ccaactgaaggtgagaaaaatacaagaag-cgggttcaattgtgttagcttttt 14903275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 21589095 - 21589034
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtccctt-gcacttccaagcgatttcactataatc 511  Q
    ||||||||| |||||| ||||||| ||||| ||| ||||||||||  |||||||||||||||    
T  21589095 ttcctcccaaaacacaggagtagtccagtctctttgcacttccaaaggatttcactataatc 21589034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 24628814 - 24628765
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagg-gttgaattgtgttggcttttt 298  Q
    |||||||||||||||||||| ||| ||| ||||||||||||| |||||||    
T  24628814 tgaaggtgagaaaaatacaagaaggaggagttgaattgtgttagcttttt 24628765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 24715477 - 24715509
Alignment:
Q  480 cccttgcacttccaagcgatttcactataatca 512  Q
    |||||||||||| ||||||||||||||||||||    
T  24715477 cccttgcacttcaaagcgatttcactataatca 24715509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 40859900 - 40859948
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  40859900 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 40859948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 553
Target Start/End: Complemental strand, 26655438 - 26655295
Alignment:
Q  412 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataat 510  Q
    ||||||||||| || | |||||||| |||||||||||  ||||||||| |||||| |||| || ||||||| |||||||| |||| ||||||||||||||    
T  26655438 agagagagagagaggagacacaaagcaattttatactggttcctcccacaacacaggagtggtccagtccccttgcactttcaagggatttcactataat 26655339  T
Q  511 cactctggattacaagttgttcaaggactcttcc-agagacttc 553  Q
    ||| |  |||||||| |||| ||||||| ||||| |||||||||    
T  26655338 cacacatgattacaaattgtccaaggacccttccaagagacttc 26655295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 461 - 572
Target Start/End: Complemental strand, 26654087 - 26653975
Alignment:
Q  461 aacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttctcaat 558  Q
    ||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||| ||||| |||||||||||  |    
T  26654087 aacacataagtagttaagtacccttgcacttccaagtgatttcactataatcactttggattacaaattggtcaaggacacttccaagagacttctc-tt 26653989  T
Q  559 gctcaagaacaact 572  Q
    ||||||| ||||||    
T  26653988 gctcaagcacaact 26653975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 412 - 542
Target Start/End: Complemental strand, 17418322 - 17418191
Alignment:
Q  412 agagagagagaaagcatacaca-aagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataa 509  Q
    ||||||||||| || ||| ||| ||||||||||||| |  ||||||||| |||||| ||||||| ||||||| |||| ||||||||  ||||||||||||    
T  17418322 agagagagagagagaatagacataagaaattttatattggttcctcccacaacacaggagtagtccagtccccttgcgcttccaaggaatttcactataa 17418223  T
Q  510 tcactctggattacaagttgttcaaggactctt 542  Q
    ||||||| |||||||| ||| ||||||||||||    
T  17418222 tcactcttgattacaa-ttgctcaaggactctt 17418191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 25917444 - 25917343
Alignment:
Q  97 tcaactttggaagtgttgtaatcatagtagacagttgcatggtggtttctccctgaactgctaggaacattttctaaggacatatttttctcactagatc 196  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||||  |||| ||  | ||||| |||| |||||||||||    
T  25917444 tcaactttgggagtgttgtaatcatagtagacggctgcatggtggtttcttcctgaagtgctaggttcattgtcataagacatgttttcctcactagatc 25917345  T
Q  197 tt 198  Q
    ||    
T  25917344 tt 25917343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 21822978 - 21823066
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggac 538  Q
    ||||||||| |||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||  ||| ||||||||    
T  21822978 ttcctcccacaacacaggagtagtccagtcccattgcacttccaagggatttcactataatcactctcgattacagcttgctcaaggac 21823066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 513
Target Start/End: Original strand, 8684985 - 8685061
Alignment:
Q  438 aattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcac 513  Q
    ||||||||| |  ||||||||| |||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  8684985 aattttatagtggttcctcccacaacacaggagtagtccagtccccttgcacttccaagggatttcactataatcac 8685061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 572
Target Start/End: Complemental strand, 16153066 - 16152912
Alignment:
Q  418 agagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactct 516  Q
    |||||||||| ||  |||| |||||||||||  ||||| ||| |||| | ||||||| || |||| || |||||| ||| |||| |||||||||||||||    
T  16153066 agagaaagcagacgtaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcactct 16152967  T
Q  517 ggattacaagttgttcaaggactcttccagagacttctcaatgctcaagaacaact 572  Q
    | ||||||| ||| |||||||| |||| | | |||||||  |||||||| ||||||    
T  16152966 gaattacaaattgctcaaggacacttcta-atacttctctttgctcaagcacaact 16152912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 24216990 - 24216899
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttggcggtttctttttctgagtgtttataaaaacctggtcagaatctga 345  Q
    ||||||| || |||| |||| |||  |||||||||||||||||||||||   |||||||||||||||||| ||| ||| | |||||||||||||||    
T  24216990 tgaaggtaagtaaaacacaagaaggggggttgaattgtgttggcttttt---ggtttctttttctgagtg-ttaaaaagaactggtcagaatctga 24216899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 538
Target Start/End: Original strand, 21823789 - 21823924
Alignment:
Q  404 aaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaa-gcgattt 501  Q
    ||||||||||||||||||||  |||||||| |  ||||| ||||   ||||||||| |||||| ||||||| || |||| ||  |||| ||| | |||||    
T  21823789 aaagagtcagagagagagaagacatacacataacaattt-atacatgttcctcccacaacacaggagtagtccaatccccttatactttcaaagagattt 21823887  T
Q  502 cactataatcactctggattacaagttgttcaaggac 538  Q
    |||||||||||||||||||||||| | | ||||||||    
T  21823888 cactataatcactctggattacaactcgctcaaggac 21823924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 24851579 - 24851529
Alignment:
Q  248 actgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  24851579 actgaaggtgagaaaaacacaagaaggagggttgaattgtgtttgcttttt 24851529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 22312765 - 22312716
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| | |||| | ||||||||||||||||||||||||    
T  22312765 ctgaaggtgagaaaaacaaaatagggagggttgaattgtgttggcttttt 22312716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 24575218 - 24575275
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataa-gaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| |||| || |||||||||||||||||| |||||||    
T  24575218 ataccaattgaaggtgagaaaaacacaagaatgaagggttgaattgtgttagcttttt 24575275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 40780496 - 40780544
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||||| ||||||||||||||| |||| ||| ||||||||||||||||    
T  40780496 ataccaattgaaggtgagaaaaacacaagaaggagggttgaattgtgtt 40780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 538
Target Start/End: Original strand, 17435587 - 17435725
Alignment:
Q  398 aaagataaagagtcagagagaga-gaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccctt-gcacttccaag 495  Q
    |||||||||||||| |||||||| ||||| ||||| ||| ||  ||||||||  ||||||| | || ||| ||||| | ||||||||| |||||||||||    
T  17435587 aaagataaagagtctgagagagatgaaag-ataca-aaacaa--tttatactggttcctcctacaaaacaagagtactccagtccctttgcacttccaag 17435682  T
Q  496 cgatttcactataatcactctggattacaagttgttcaaggac 538  Q
     |||||||||||||||| ||| || ||||| ||  ||||||||    
T  17435683 ggatttcactataatcaatcttgaatacaattttctcaaggac 17435725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 538
Target Start/End: Complemental strand, 27766267 - 27766142
Alignment:
Q  412 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataat 510  Q
    ||||||||||| ||||||||||| || | ||||||||  ||||||| | ||  ||  |||||| ||||||| || ||||||||||  |||||||||||||    
T  27766267 agagagagagagagcatacacaa-gacaatttatacttgttcctcctacaaaccagaagtagtccagtccccttacacttccaaggaatttcactataat 27766169  T
Q  511 cactctggattacaagttgttcaaggac 538  Q
    ||| || |||||||| ||| ||||||||    
T  27766168 cacactagattacaa-ttgctcaaggac 27766142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 514
Target Start/End: Original strand, 19563955 - 19564029
Alignment:
Q  441 tttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcact 514  Q
    ||||||||  ||||||||| ||||||||||| || || |||| ||||||||||||| || |||| ||||||||||    
T  19563955 tttatactggttcctcccacaacacatgagtggtccaatccccttgcacttccaagggaattcattataatcact 19564029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 553
Target Start/End: Complemental strand, 21770326 - 21770253
Alignment:
Q  480 cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttcc-agagacttc 553  Q
    |||||||||||| ||| |||||||||||||||   || |||||||| ||| |||||||||||||| |||||||||    
T  21770326 cccttgcacttctaagagatttcactataatcttactagattacaa-ttgctcaaggactcttccaagagacttc 21770253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 22782550 - 22782488
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||| ||||||| ||||||||| ||||| |||| |||  ||||||||||||||| |||||||    
T  22782550 gctctgataccaattgaaggtgataaaaacacaagaaggggggttgaattgtgttagcttttt 22782488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 27766479 - 27766406
Alignment:
Q  226 cacagaccgtgctctaataccaactgaaggtgagaaaaatacaataa-gaagggttgaattgtgttggcttttt 298  Q
    |||| ||| |||||| |||||||||||||| ||||||||||||| || | || ||| |||||||||| ||||||    
T  27766479 cacaaaccttgctctgataccaactgaaggggagaaaaatacaagaagggagagtttaattgtgttgacttttt 27766406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 6391861 - 6391909
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||||| |||||    
T  6391861 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggtttttt 6391909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 16158073 - 16158029
Alignment:
Q  430 cacaaagaaattttatactctttcctcccataacacatgagtagt 474  Q
    ||||||| |||||||||||  ||||||||| ||||||||||||||    
T  16158073 cacaaagcaattttatactagttcctcccacaacacatgagtagt 16158029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 19539647 - 19539695
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  19539647 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 19539695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 21538092 - 21538044
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||||||| ||| | | |||||||||||| |||||||    
T  21538092 tgaaggtgagaaaaatacaagaaggaagattgaattgtgtttgcttttt 21538044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 28551825 - 28551777
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  28551825 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 28551777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 28702137 - 28702089
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  28702137 ataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 28702089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 41122583 - 41122543
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  41122583 tgaaggtgagaaaaacacaagaaggagggttgaattgtgtt 41122543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 392 - 572
Target Start/End: Complemental strand, 12440037 - 12439856
Alignment:
Q  392 gaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcactt 490  Q
    |||| ||||||||||||| || | | ||||||| || | |||||  |||||||||||  ||||||||| ||  || ||||| | || ||| |||||||||    
T  12440037 gaacacaaagataaagagacaaaaa-agagaaaacagagacaaaacaattttatactagttcctcccacaattcaggagtactccaatcctcttgcactt 12439939  T
Q  491 ccaagcgatttcactataatcactctggattacaagttgttcaaggactc-ttccagagacttctcaatgctcaagaacaact 572  Q
    ||||| |||||||||||||||||| ||||||||||  || ||||| || | ||| ||||||||||||||||||||| ||||||    
T  12439938 ccaagggatttcactataatcactatggattacaaaatgctcaagcacactttcaagagacttctcaatgctcaagcacaact 12439856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 9757278 - 9757155
Alignment:
Q  399 aagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcg 497  Q
    ||||||||||||||||||||||  |  |||| |||||| ||||| | |||  ||||||||| |||||||||||||| |||| |||||| ||||||||  |    
T  9757278 aagataaagagtcagagagagaaga--catagacaaagcaattt-acactggttcctcccacaacacatgagtagtccagtccccttgaacttccaatag 9757182  T
Q  498 atttcactataatcactctggattaca 524  Q
     ||||||| |||||||||| |||||||    
T  9757181 ctttcactttaatcactcttgattaca 9757155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 9757370 - 9757307
Alignment:
Q  311 ttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtccgaat 374  Q
    |||| ||||||||||||||  ||||||||||||||||||| |||||||||||| ||||| ||||    
T  9757370 ttctaagtgtttataaaaatttggtcagaatctgatgttacagattctgactcagagtctgaat 9757307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 12440153 - 12440083
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttggcggtttctttttctgagtgtt 321  Q
    ||||||||||||||| |||| |||  ||||||||||||||||||||||| | ||||||||||||| ||||||    
T  12440153 tgaaggtgagaaaaacacaaaaagtggggttgaattgtgttggcttttt-gtggtttctttttcttagtgtt 12440083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 27857974 - 27858029
Alignment:
Q  243 taccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  27857974 taccaactgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 27858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 23975729 - 23975674
Alignment:
Q  243 taccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  23975729 taccaactgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 23975674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 9345960 - 9346014
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| |||| |||||||||||||||||| |||| ||| ||||||||||||||||    
T  9345960 gctctgatacaaactgaaggtgagaaaaacacaagaaggagggttgaattgtgtt 9346014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 553
Target Start/End: Complemental strand, 19019914 - 19019801
Alignment:
Q  441 tttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggact 539  Q
    ||||||||  ||||||||| || ||||||||||| |||| |||||||||||  |||  |||||||||||||| | || |||||| | ||| |||||||||    
T  19019914 tttatactggttcctcccacaatacatgagtagtccagtccccttgcacttttaaggaatttcactataatctcactagattacca-ttgctcaaggact 19019816  T
Q  540 cttcc-agagacttc 553  Q
    ||||| |||||||||    
T  19019815 cttccaagagacttc 19019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 22153020 - 22153069
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  22153020 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 22153069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 46181733 - 46181690
Alignment:
Q  247 aactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    |||||||||||||||||| |||| |||| |||||||||||||||    
T  46181733 aactgaaggtgagaaaaacacaagaagaggggttgaattgtgtt 46181690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 510
Target Start/End: Complemental strand, 12669884 - 12669814
Alignment:
Q  441 tttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataat 510  Q
    ||||||||  ||||||||| ||||||  |||||| ||||||| |||||||||||||  |||||||||||||    
T  12669884 tttatactggttcctcccacaacacaatagtagtccagtccccttgcacttccaaggaatttcactataat 12669814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 22601471 - 22601413
Alignment:
Q  241 aataccaactgaaggtgagaaaaatacaataaga-agggttgaattgtgttggcttttt 298  Q
    |||||| ||||||||||||||||| |||| ||||  ||||||||||||||| |||||||    
T  22601471 aatacccactgaaggtgagaaaaacacaaaaagagggggttgaattgtgttagcttttt 22601413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 23917082 - 23917144
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||| ||||||||||||||||| ||||| |||| |||   |||||||||||||| |||||||    
T  23917082 gctctgataccaactgaaggtgataaaaacacaagaagggaggttgaattgtgttagcttttt 23917144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 25449483 - 25449426
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggct 294  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||    
T  25449483 gctctgataccaattgaaggtgagaaaaacacaagaag-ggggttgaattgtgttggct 25449426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 7308986 - 7309034
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||||| |||||    
T  7308986 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggtttttt 7309034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 12625430 - 12625390
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  12625430 tgaaggtgagaaaaacacaagaaggagggttgaattgtgtt 12625390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 22465696 - 22465656
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    |||||||||||||||||||| |||  |||||||||||||||    
T  22465696 tgaaggtgagaaaaatacaagaaggggggttgaattgtgtt 22465656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 24286274 - 24286231
Alignment:
Q  277 ggttgaattgtgttggctttttggcggtttctttttctgagtgtt 321  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||    
T  24286274 ggttgaattgtgttggcttctt-gcggtttctttttctaagtgtt 24286231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 30892260 - 30892308
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  30892260 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 30892308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 31910762 - 31910809
Alignment:
Q  497 gatttcactataatcactctggattacaagttgttcaaggactcttcca 545  Q
    |||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  31910762 gatttctctataatcactattgattacaa-ttgttcaaggactcttcca 31910809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 572
Target Start/End: Original strand, 1028 - 1184
Alignment:
Q  418 agagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtc-ccttgcacttccaagcgatttcactataatcactct 516  Q
    |||||| ||| |||||||  ||||||||| |  ||||||| | ||  || ||||||| ||||| |||| |||||||||| ||||||||||| ||||| |     
T  1028 agagaaggcaaacacaaaacaattttatattggttcctcctacaatccaggagtagtccagtctccttacacttccaagagatttcactatgatcacaca 1127  T
Q  517 ggattacaagttgttcaaggactcttcc-agagacttctcaatgctcaagaacaact 572  Q
     |||||||| ||  |||||||| ||||| ||||||||| ||||||||||| ||||||    
T  1128 cgattacaaatttctcaaggacacttccaagagacttcgcaatgctcaagcacaact 1184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 10888 - 10792
Alignment:
Q  468 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccagagacttctcaatgctca 563  Q
    ||||||| ||||||| |||||||||  || | |||||||||||||| ||| |||||||| |||||||||||  |  | |||||||||||||||||||    
T  10888 gagtagtccagtccccttgcacttcacagggttttcactataatcaatcttgattacaatttgttcaaggaaacaccaagagacttctcaatgctca 10792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 2650 - 2699
Alignment:
Q  249 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  2650 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 2699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 7858 - 7914
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| | || |||| ||||||||||||||| |||||||    
T  7858 ataccaattgaaggtgagaaaaacataagaagaggggttgaattgtgttagcttttt 7914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 23824 - 23872
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| ||| |||||||||||||||||| |||||    
T  23824 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttggtttttt 23872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 510
Target Start/End: Original strand, 78757 - 78817
Alignment:
Q  451 ttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataat 510  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||| ||||| ||||||||    
T  78757 ttcctcctacaacacatgagtagtccagtcctcttgcacttccaagggattttactataat 78817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 7637 - 7574
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaat-acaataagaagggttgaattgtgttggcttttt 298  Q
    ||||| ||||||| |||||||||||||||  |||| |||  |||||||||||||||||||||||    
T  7637 gctctgataccaattgaaggtgagaaaaaacacaagaaggggggttgaattgtgttggcttttt 7574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 33787 - 33733
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  33787 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 33733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 52620 - 52566
Alignment:
Q  236 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  52620 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 52566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 19577 - 19520
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 298  Q
    ||||||| ||||||||||||||| |||| |||  ||| ||||||||||||||||||||    
T  19577 ataccaattgaaggtgagaaaaacacaagaagggggggttgaattgtgttggcttttt 19520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 25772 - 25841
Alignment:
Q  271 aagaagggttgaattgtgttggctttttggcggtttctttttctgagtgtttataaaaacctggtcagaatctga 345  Q
    |||| ||||||||||||||||| ||||| ||| ||||||||||| ||||||    ||||||||||||||| ||||    
T  25772 aagaggggttgaattgtgttgg-ttttttgcgatttctttttctaagtgtt----aaaacctggtcagaacctga 25841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 21857 - 21809
Alignment:
Q  242 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 290  Q
    ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  21857 ataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 21809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 13191 - 13239
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  13191 tgaaggtgagaaaaacacaaaaaggggggttgaattgtgttagcttttt 13239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 8639 - 8568
Alignment:
Q  226 cacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||| ||||| |||| ||||||||||||| | ||||||| | ||||||  |||||||||||||||| ||||||    
T  8639 cacaaaccgttctctgataccaactgaagataagaaaaacataataag-ggggttgaattgtgttgccttttt 8568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 87092 - 87140
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    |||| |||||||||| |||| ||| |||||||||||||||| |||||||    
T  87092 tgaaagtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 87140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 36626 - 36674
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  36626 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 36674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 134686 - 134734
Alignment:
Q  250 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 298  Q
    ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  134686 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 134734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University