View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4727-Insertion-7 (Length: 521)
Name: NF4727-Insertion-7
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727-Insertion-7 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0189 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 7 - 521
Target Start/End: Original strand, 14267 - 14781
Alignment:
| Q |
7 |
aggaatcactacgtcgttaaaactgatacttggaaaaacaggtcctctggtcatggaaaagagttatacaaaacattgtttggcgatgtttttattttgg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14267 |
aggaatcactacgtcgttaaaactgatacttggaaaaacaggtcctctggtcatggaaaagagttatacaaaacattgtttggcgatgtttttattttgg |
14366 |
T |
|
| Q |
107 |
cagattttaaacctgaaacggttaatgatttgcaaaggtcaggaagaacgtggagttttgtgttgtcggctggttttctagatgaggagatccaaggcga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14367 |
cagattttaaacctgaaacggttaatgatttgcaaaggtcaggaagaacgtggagttttgtgttgtcggctggttttctagatgaggagatccaaggcga |
14466 |
T |
|
| Q |
207 |
agatgatgatactaaacttatgcctacttttaaagtgattgcttctgaagacattgacattgatgaaatggggcaaaaatctttgtttattatattcttg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14467 |
agatgatgatactaaacttatgcctacttttaaagtgattgcttctgaagacattgacattgatgaaatggggcaaaaatctttgtttattatattcttg |
14566 |
T |
|
| Q |
307 |
acgaagataacacctaatagaagaatatggaacgtgctgcatatgggtggagactcaaagctgattaagaaaattttatgtcccagtgtcgtggtaagat |
406 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14567 |
acgaatataacacctaatagaagaatatggaacgtgctgcatatgggtggagagtcaaagctgattaagaaaattttatgtcccagtgttgtggtaagat |
14666 |
T |
|
| Q |
407 |
tgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattgttgattgtttgttttagttattt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14667 |
tgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattgttgattgtttgttttagttattt |
14766 |
T |
|
| Q |
507 |
atagcactattgtag |
521 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14767 |
atagcactattgtag |
14781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University