View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727-Insertion-8 (Length: 488)
Name: NF4727-Insertion-8
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727-Insertion-8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 104 - 488
Target Start/End: Original strand, 32679640 - 32680022
Alignment:
| Q |
104 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
32679640 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa |
32679739 |
T |
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| Q |
204 |
atatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
303 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679740 |
atatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
32679839 |
T |
|
| Q |
304 |
ttcaaataatgagcggaattataatacyttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcatacaaactctcgctg |
403 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32679840 |
ttcaaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcgtcttcatacaaactctcgctg |
32679939 |
T |
|
| Q |
404 |
ttaaacacacacatacaaaacacgcatgtttaatcttcaacattcccattctggcagttcacactaaaaaactaatacaaccaag |
488 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679940 |
ttaa--acacacatacaaaacacgcatgtttaatcttcaacattcccattctggcagttcacactaaaaaactaatacaaccaag |
32680022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
| Q |
130 |
aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa |
177 |
Q |
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| T |
32679630 |
aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa |
32679676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 166 - 436
Target Start/End: Original strand, 28136025 - 28136291
Alignment:
| Q |
166 |
aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaa |
265 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28136025 |
aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataacagct-----acatgaagaaagagactccatatatgcaa |
28136119 |
T |
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| Q |
266 |
aaat-agcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataatacyttctatacaagtagtgcagcgagttgcctttgg |
364 |
Q |
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||| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||| ||| || |||| |||||||| || |||||||||||| |
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| T |
28136120 |
aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttgg |
28136219 |
T |
|
| Q |
365 |
taatgatcaaactcctcatcttcatacaaactctcgctgttaaacacacacatacaaaacacgcatgtttaa |
436 |
Q |
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| T |
28136220 |
tgctgatcaaaggcctcctcttcgtacaaactctcactatttaacacatacatacaaaccacacatgtttaa |
28136291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
| Q |
59 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
139 |
Q |
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|||||||||||| |||||||||||||| ||||| ||| |||||| |||||||||| | ||||||| | ||||||||||| |
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| T |
28135955 |
gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa |
28136035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 405
Target Start/End: Complemental strand, 44806795 - 44806585
Alignment:
| Q |
194 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
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| T |
44806795 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa |
44806696 |
T |
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| Q |
294 |
cacatgacagttcaaataatgagcggaattataatacyttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcatacaa |
393 |
Q |
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|| ||||| |||||||||||||| ||| || | ||| || ||||||||| ||| || ||||||||||| | |||||||||||||||||||| ||||| |
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| T |
44806695 |
catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttgatgctgatcaaactcctcatcttcgtacaa |
44806597 |
T |
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| Q |
394 |
actctcgctgtt |
405 |
Q |
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|||||| ||||| |
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| T |
44806596 |
actctcactgtt |
44806585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
| Q |
72 |
tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
139 |
Q |
| |
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|||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| |||||| |
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| T |
44806873 |
tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa |
44806806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 141 - 307
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
| Q |
141 |
ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat |
240 |
Q |
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|||||||||| ||||||||| | | |||||||||| || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2230609 |
ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat |
2230511 |
T |
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| Q |
241 |
gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca |
307 |
Q |
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|||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||| |
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| T |
2230510 |
gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca |
2230444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
| Q |
59 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa |
138 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || |||||||||| |
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| T |
2230655 |
gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa |
2230576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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