View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727-Insertion-9 (Length: 403)
Name: NF4727-Insertion-9
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 26 - 389
Target Start/End: Original strand, 49056804 - 49057167
Alignment:
| Q |
26 |
tgacaggtggattccaaatctgataaaggcatcctaaaatttacaagnnnnnnnnntcccctcaaatcactataaaagtcactctaatgttcatacttca |
125 |
Q |
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| T |
49056804 |
tgacaggtggattccaaatctgataaaggcatcctaaaatttacaagaaaaaaaaatcccctcaaatcactataaaagtcactccaatgttcatacttca |
49056903 |
T |
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| Q |
126 |
gaaactcaataagaaacgacaccgatccaacagtatgtttaggatttaataaccaaagaccaaatgaactggaaaacttcttgtcttcagtgaagcattg |
225 |
Q |
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| T |
49056904 |
gaaactcaataagaaacgacaccgatccaacagtatgtttaggatttaatatccaaagaccaaatgaactggaaaacttcttgtcttcagtgaagcattg |
49057003 |
T |
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| Q |
226 |
atgctactcctaatatgagaaactttattagtgtaatgaaatcactttgaaataaacaaacgtgacttccttaagtctgattcctttgaaatactgtctt |
325 |
Q |
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| T |
49057004 |
atgctactcctaatatgagaaactttattagtgtaacgaaatcactttgaaataaacaaatgtgacttccttaagtctgattcctttgaaatactgtctt |
49057103 |
T |
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| Q |
326 |
cctcatgaatgttgcttctcgctcttccaggtttcatggcaattgggaaagggacctgtgttac |
389 |
Q |
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| T |
49057104 |
cctcatgaatgttgcttctcactcttccaggtttcatggcaattgggaaagggacctgtgttac |
49057167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 6555404 - 6555299
Alignment:
| Q |
279 |
aaacaaacgtgacttccttaagtctgattcctttgaaatactgtcttcctcatgaatgttgcttctcgctcttccaggtttcatggcaattgggaaaggg |
378 |
Q |
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| T |
6555404 |
aaacaaatgtgacttcctta-gtctgattcctttgaaatactgtcttcctcatgaatgctgcttctcattcttccaggtttcatggcaattgggaaaggg |
6555306 |
T |
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| Q |
379 |
acctgtg |
385 |
Q |
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| T |
6555305 |
acctgtg |
6555299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 6555579 - 6555515
Alignment:
| Q |
160 |
atgtttaggatttaataaccaaagaccaaatgaactggaaaacttcttgtcttcagtgaagcattg |
225 |
Q |
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| T |
6555579 |
atgtttaggatttaataacaaaagac-aaatgaaatggaaaacttcttggcttcattgaagtattg |
6555515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 6555735 - 6555687
Alignment:
| Q |
84 |
ccctcaaatcactataaaagtcactctaatgttcatacttcagaaactc |
132 |
Q |
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| T |
6555735 |
ccctcgaatcactatacaagtctctccaatgttcataattcagaaactc |
6555687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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