View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4727_high_10 (Length: 395)

Name: NF4727_high_10
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4727_high_10
NF4727_high_10
[»] chr5 (2 HSPs)
chr5 (124-376)||(4292492-4292740)
chr5 (2-106)||(4292760-4292862)
[»] chr3 (1 HSPs)
chr3 (2-84)||(46344412-46344494)
[»] chr8 (2 HSPs)
chr8 (2-83)||(38504169-38504250)
chr8 (2-83)||(30927922-30928003)
[»] chr6 (2 HSPs)
chr6 (5-52)||(24881758-24881805)
chr6 (60-92)||(19789125-19789157)
[»] scaffold0618 (1 HSPs)
scaffold0618 (2-50)||(3392-3440)
[»] scaffold0019 (1 HSPs)
scaffold0019 (2-83)||(72365-72446)
[»] chr1 (1 HSPs)
chr1 (2-82)||(37669398-37669478)
[»] chr7 (1 HSPs)
chr7 (2-84)||(30864408-30864490)
[»] chr4 (1 HSPs)
chr4 (2-84)||(54165152-54165234)
[»] chr2 (3 HSPs)
chr2 (2-84)||(34144542-34144624)
chr2 (5-83)||(44484650-44484728)
chr2 (2-50)||(30192342-30192390)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 124 - 376
Target Start/End: Complemental strand, 4292740 - 4292492
Alignment:
Q  124 gatatgatcctccatttcgtcacgtttatggtgtgttaatcactaaaactatgaggtccttacacttctgttttttacaaagcccctaaatatttgagaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4292740 gatatgatcctccatttcgtcacgtttatggtgtgttaatcactaaaattatgaggtccttacacttctgttttttacaaagcccctaaatatttgagaa 4292641  T
Q  224 nnnnnnnagatcacacagagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaata 323  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4292640 tttttttagatcacacagagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaata 4292541  T
Q  324 tacaaatccaactcaactcaatctgtatatgtttgtttgatcgaccaggacat 376  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  4292540 tacaaatccaactcaactcaatctgtatatg----tttgatcgaccaggacat 4292492  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 4292862 - 4292760
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctcttaaagatatgatcctcct 101  Q
    |||||||| | |||||| | || || ||||||||| |||| ||||||||||       ||||| ||||||||||||||||  ||||||||||||||||||    
T  4292862 gaggataagagcatcatgtaaacatgagagagaaagttgtccaaaaattgtaaaaaaatggttctacatatatcatttct--taaagatatgatcctcct 4292765  T
Q  102 ttgtc 106  Q
    |||||    
T  4292764 ttgtc 4292760  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 46344494 - 46344412
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctctt 84  Q
    |||||||| | |||||||||||||| |||||||||||||| ||||||||||       | |||||||| ||||||||||||||    
T  46344494 gaggataagaccatcatatgaatatgagagagaaaattgtacaaaaattgtaacaaattagttgtacaaatatcatttctctt 46344412  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 38504250 - 38504169
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctct 83  Q
    |||||||| |||||||||||| ||||||||||||| ||||  |||||||||       |||||||||| |||||||||||||    
T  38504250 gaggataacaacatcatatgagtattagagagaaagttgtcaaaaaattgtagcaaaatggttgtacaaatatcatttctct 38504169  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 30927922 - 30928003
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctct 83  Q
    |||||||| | |||||||||| ||| ||||||||| |||| ||||||||||       |||||||||| |||||||||||||    
T  30927922 gaggataagaccatcatatgagtatgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctct 30928003  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 24881758 - 24881805
Alignment:
Q  5 gataataacatcatatgaatattagagagaaaattgttcaaaaattgt 52  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  24881758 gataataacatcatgtgaatataagagagaaaattgttcaaaagttgt 24881805  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 19789125 - 19789157
Alignment:
Q  60 tggttgtacatatatcatttctcttaaagatat 92  Q
    |||||||||| ||||||||||||||||||||||    
T  19789125 tggttgtacaaatatcatttctcttaaagatat 19789157  T

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Target: scaffold0618 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 3440 - 3392
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaatt 50  Q
    |||||||| | |||||||||||||| |||||||||||||| ||||||||    
T  3440 gaggataagaccatcatatgaatatgagagagaaaattgtacaaaaatt 3392  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 72446 - 72365
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctct 83  Q
    |||||||| ||  |||| ||||||| |||||||||||||||||||| ||||       |||||||||| |||||||||||||    
T  72446 gaggataaaaatgtcatgtgaatatgagagagaaaattgttcaaaagttgttgcaaaatggttgtacaaatatcatttctct 72365  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 37669478 - 37669398
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctc 82  Q
    ||||||||||||||||| ||||||| ||||||||| ||||| |||| ||||       || ||||||| ||||||||||||    
T  37669478 gaggataataacatcatgtgaatatgagagagaaatttgttaaaaagttgtatcaaaatgattgtacaaatatcatttctc 37669398  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 30864408 - 30864490
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctctt 84  Q
    |||||||| | |||||||||| ||| ||||||||| |||| ||||| ||||       |||||||||| ||||||||||||||    
T  30864408 gaggataagaccatcatatgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctctt 30864490  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 54165152 - 54165234
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctctt 84  Q
    ||||||||||||||||| ||| ||| ||||| ||| ||||  |||||||||       |||||||||| ||||||||||||||    
T  54165152 gaggataataacatcatgtgagtatgagagaaaaagttgtcaaaaaattgtagtaaaatggttgtacaaatatcatttctctt 54165234  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 34144542 - 34144624
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctctt 84  Q
    |||||||| | |||||| ||| ||| ||||||||| |||| ||||||||||       |||||||||| ||||||||||||||    
T  34144542 gaggataagaccatcatgtgagtatgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctctt 34144624  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 44484650 - 44484728
Alignment:
Q  5 gataataacatcatatgaatattagagagaaaattgttcaaaaattgtnnnnnnntggttgtacatatatcatttctct 83  Q
    ||||| |||||||| ||| ||| ||||||||| |||| ||||||||||       |||||||||| |||||||||||||    
T  44484650 gataagaacatcatgtgagtatgagagagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcatttctct 44484728  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 30192342 - 30192390
Alignment:
Q  2 gaggataataacatcatatgaatattagagagaaaattgttcaaaaatt 50  Q
    |||||||| || ||||| ||| ||| |||||||||||||||||||||||    
T  30192342 gaggataaaaatatcatgtgagtatgagagagaaaattgttcaaaaatt 30192390  T

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