View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_11 (Length: 358)
Name: NF4727_high_11
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 28191659 - 28191988
Alignment:
| Q |
18 |
aatataacataaattatctaatgccatgaagatagaaggccttttaaatctatcataacagtgtatatgctagattgatagtttctgcaagaaattaagg |
117 |
Q |
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| T |
28191659 |
aatataacataaattatctaatgccatgaagatagaaggccttttaaatctatcataacagtgtatatgctagattgatagtttctgcaagaaattaagg |
28191758 |
T |
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| Q |
118 |
tcctccatcactatggtctagccatcacagtaccagcagatgatgacaatgctcctcattgatcatgtaacatcaattaagcatattattgaccgagcaa |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28191759 |
tcctccatcactatgatctagccatcacagtaccagcagatgatgacagtgctcctcattgatcatgtaacatcaattaagcatattattgaccgagcaa |
28191858 |
T |
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| Q |
218 |
ctttgagtcacatgccacgattttaacccgtccaacattctcttgtttgtcttcactcttaaacaaagcatcttgtaagatgaaggtccagacattgtca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28191859 |
ctttgagtcacatgccacgattttaacccgtccaacattctcttgtttgtcttcactcttaaacaaagcatcttgtaagatgaaggtccagacattgtca |
28191958 |
T |
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| Q |
318 |
caaaatctgtatgtatgaagatgtccctat |
347 |
Q |
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| T |
28191959 |
caaaatctgtatgtatgaagatgtccctat |
28191988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 192 - 345
Target Start/End: Original strand, 159919 - 160072
Alignment:
| Q |
192 |
aattaagcatattattgaccgagcaactttgagtcacatgccacgattttaacccgtccaacattctcttgtttgtcttcactcttaaacaaagcatctt |
291 |
Q |
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|||| ||||||||| |||| |||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
159919 |
aattgagcatattactgactgagcaatttcgagtcacatgccactattttaacccgtccaacattctcttggttgtcttcattcttaaacaaagcatctt |
160018 |
T |
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| Q |
292 |
gtaagatgaaggtccagacattgtcacaaaatctgtatgtatgaagatgtccct |
345 |
Q |
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| T |
160019 |
gtaagatgaaggtccaaacattgtcacaaaatctgtatgtatgcagatgtccct |
160072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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