View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_12 (Length: 350)
Name: NF4727_high_12
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 39485489 - 39485157
Alignment:
| Q |
1 |
tgatccctttgtcaaatggtaaggttaattgtaaactgtgttttgatttaattatgcgtgctcctttgttttaatgttgtataccatgcttacctgcatt |
100 |
Q |
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| T |
39485489 |
tgatccctttgtcaaatggtaaggttaattgtaaactgtgttttgatttaattatgcgtgctcctttgttttaatgttgtataccatgcttacctgcatt |
39485390 |
T |
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| Q |
101 |
tggcagtttcatagaacattcatttaatttagttgaaatctttgagatattttgcttaatttaatttagtttcaacttatattgtattatgacctattat |
200 |
Q |
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| T |
39485389 |
tggcagtttcatagaacattcatttaatttagttgaaatctttgagatattttgcttaatttaatttagtttcaacttatattgtattatgacttattat |
39485290 |
T |
|
| Q |
201 |
ttctgtgtactcggtgaacttgg-ccttctatattgtattaacttctactcaatggatgaaacttgtgcacactattcttannnnnnnnnnnnnngtgtg |
299 |
Q |
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| T |
39485289 |
ttctgtgtactcggtgaacttggtccttctatattgtattaacttctactcaatggatgaaacttgtgcacactattcttatttttttaatttttgtgtg |
39485190 |
T |
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| Q |
300 |
tatactcaatttggttaagaatgaaaatgtaac |
332 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39485189 |
tatactcaatttggttaagaatgaaaatgtaac |
39485157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 39477675 - 39477565
Alignment:
| Q |
171 |
ttcaacttatattgtattatgacctattatttctgtgtactcggtgaacttgg-ccttctatattgtattaacttctactcaatggatgaaacttgtgca |
269 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
39477675 |
ttcaacttttaatgtattatgacctattatttctgtgtactcggtgaacttggtccttctatattgtattaacttctaatcaacgaatgaaacttgtgca |
39477576 |
T |
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| Q |
270 |
cactattctta |
280 |
Q |
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|| |||||||| |
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| T |
39477575 |
cattattctta |
39477565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 39456602 - 39456651
Alignment:
| Q |
224 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcacact |
273 |
Q |
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| T |
39456602 |
ccttctatattgtattaacttctagtcaatgaatgaagcttgtgcacact |
39456651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 39488616 - 39488567
Alignment:
| Q |
224 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcacact |
273 |
Q |
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|||||||||||||||||| |||||||||||| ||||| |||||||||||| |
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| T |
39488616 |
ccttctatattgtattaatttctactcaatgaatgaagcttgtgcacact |
39488567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 39452464 - 39452511
Alignment:
| Q |
224 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcaca |
271 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
39452464 |
ccttatatattgtaataacttctactcaatgaatgaagcttgtgcaca |
39452511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 39477549 - 39477515
Alignment:
| Q |
298 |
tgtatactcaatttggttaagaatgaaaatgtaac |
332 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
39477549 |
tgtataatcaatttggttaagaatgaaaatgtaac |
39477515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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