View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_16 (Length: 294)
Name: NF4727_high_16
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 14576499 - 14576233
Alignment:
| Q |
18 |
acatcaggactcaggagtttccacataaaactcagcaaattttttaccactatcatacctattgctcaagtgcattaatgttgtaatcaagagttccgcc |
117 |
Q |
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| T |
14576499 |
acatcaggactcaggagtttccacataaaactcagcaaattttttaccactatcatacctattgctcaagtgcattaatgttgtaatcaagagttccgcc |
14576400 |
T |
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| Q |
118 |
aacaattttaaattcataaatatctactttacaatatacaaagcaagacaaagctaaacacaaattatcttactttgatatatttgagacattcttgtca |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14576399 |
aacaactttaaattcataaatatctactttacaatatacaaagcaagacaaagctaaacacaaattatcttactttgatatatttgagacattcttgtca |
14576300 |
T |
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| Q |
218 |
ggaattctttttgggggccatgtattgtctgttgcgaccaaaacttcccattccaccatacttcttc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14576299 |
ggaattctttttgggggccatgtattgtctgttgcgaccaaaacttcccattccaccatacttcttc |
14576233 |
T |
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