View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_20 (Length: 251)
Name: NF4727_high_20
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 22006550 - 22006329
Alignment:
| Q |
19 |
cagtaaataattcaaccgcttcaatgaacagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttccgatggattgtgcat |
118 |
Q |
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| T |
22006550 |
cagtaaataatttaaccgcttcgatgaacagcaaatgtaaacctggaataatttcc-aagtccatagtcagtgatgttggtttgccgatggatggtgcat |
22006452 |
T |
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| Q |
119 |
atcccggtcctggttgcacaattggagctgatctttatgatccagatcaaccactgtggattgatagaggtttggaatcttcaaatgtgctcctaaatat |
218 |
Q |
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| T |
22006451 |
atcccggtcctggttgcacaagtggagctgatctttatgatccagatcaaccactgtggaatgatagaggtctggaatcttcaaatgcgcttctaaatat |
22006352 |
T |
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| Q |
219 |
gcagtcgtcaaagattgatgatg |
241 |
Q |
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|||||| || ||||||||||||| |
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| T |
22006351 |
gcagtcatcgaagattgatgatg |
22006329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 22037893 - 22038125
Alignment:
| Q |
5 |
tggatcactacatgcagtaaataattcaaccgcttcaatgaacagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttcc |
104 |
Q |
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|||||||| |||| |||||||||||| | | ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||| || |
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| T |
22037893 |
tggatcaccacattcagtaaataatttatca-ctttgatgaacatcaaatgtaaacctggaataatttcc-aagtccatagtcagtgatggttgtttgcc |
22037990 |
T |
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| Q |
105 |
gatggattgtgcatatcccggtcctggttgcacaattggagctgatctttatgatccagatcaaccactgtggattgatagaggtttggaatcttcaaat |
204 |
Q |
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||| || |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | || ||||| |||| |||||| ||||||| |
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| T |
22037991 |
aatgaatggtgcatatcccgatcctgattgcacaagtggagctgatctttatgatccagatcaaccactattgaatgataaaggtctggaattttcaaat |
22038090 |
T |
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| Q |
205 |
gtgctcctaaatatgcagtcgtcaaagattgatgatg |
241 |
Q |
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| T |
22038091 |
gcgctcctaa--atgcagtcatcgaagattgatgatg |
22038125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 539246 - 539434
Alignment:
| Q |
5 |
tggatcactacatgcagtaaataattcaaccgcttcaatgaacagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttcc |
104 |
Q |
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||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |
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| T |
539246 |
tggatcactgcattcagtaaataattcaactgcttcaatgaacagcaaatgtaaacctggaataatttcc-aagtccattgtcagtgatgttggttcgtc |
539344 |
T |
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| Q |
105 |
gatggattgtgcatatcccggtcctggttgcacaattggagctgatctttatgatccagatcaaccactgtggattgatagaggtttgga |
194 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
539345 |
gatggatggtgcatatcccggtcctggttgcacaagtggagctgatctttatgatccagatcaaccactgtggaatgataggggtctgga |
539434 |
T |
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