View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_21 (Length: 251)
Name: NF4727_high_21
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 34490520 - 34490291
Alignment:
| Q |
1 |
taaagagactgaggggcttttaattttccaaatttattttacaagaacaacattattttttggccgagaagaagaaaaatataatattatggttaaaatt |
100 |
Q |
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| T |
34490520 |
taaagagactgaggggcttttaattttccaaatttattttacaagaacaacattatattttggccgagaagaagaaaaa---aatattgtggttaaaatt |
34490424 |
T |
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| Q |
101 |
cacgtatacatcatttgtagtcaaatgtgtgggtggtaaatgatgaagatgactgatgatgacagcaacaatcacttctaccatggtagttgtttttctt |
200 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
34490423 |
cacatatacgtcatttgtagtcaaatgtgtgggtggtaaatggtgaagatggccgatgatgacaacaacaatcacttctactatggtagttgtttttctt |
34490324 |
T |
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| Q |
201 |
tccctcttccatttgagtttgaaccatgacttt |
233 |
Q |
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| T |
34490323 |
tccctcttccatttgagtttgaaccatgacttt |
34490291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 34514674 - 34514456
Alignment:
| Q |
3 |
aagagactgaggggcttttaattttccaaatttattttacaagaacaacattattttttggccgagaagaagaaaaatataatattatggttaaaattca |
102 |
Q |
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| T |
34514674 |
aagagactgaggggcttataattttccaaatttattttataagaacagcattaatttttggctgagaagaagaaaaa-agaa-attgtggttaaaattca |
34514577 |
T |
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| Q |
103 |
cgtatacatcatttgtagtcaaatgtgtgggtggtaaatgatgaagatgactgatgatgacagcaacaatcacttctaccatggtagttgtttttctttc |
202 |
Q |
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| T |
34514576 |
cgtatacgtcattt-------aatttgt---agtcaaatggtgaagatggtcgatgatgacaacaacaatcacttttactatagtagttgcttttctttc |
34514487 |
T |
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| Q |
203 |
cctcttccatttgagtttgaaccatgacttt |
233 |
Q |
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| T |
34514486 |
cctcttccatttgagtttgaaccatgacttt |
34514456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27631356 - 27631149
Alignment:
| Q |
1 |
taaagagactgaggggcttttaattttccaaatttattttacaagaacaacattattttttggccgagaagaagaaaaatataatattatggttaaaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||| | |||||| ||||||||||| |
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| T |
27631356 |
taaagagactgaggggcttttaattttccaaatttatttaataagaacaacattaatttttggctgagaagaagaaaa--aaaatattgtggttaaaatt |
27631259 |
T |
|
| Q |
101 |
cacgtatacatcatttgtagtcaaatgtgtgggtggtaaatgatgaagatgactgatgatgacagcaacaatcacttctaccatggtagttgtttttctt |
200 |
Q |
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||||||||| |||||| ||| ||| | ||||| |||||||| |||||||||| |||||||||||| ||| |||||||||| ||||||| |
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| T |
27631258 |
cacgtatacgtcattt-------aatttgt---agtcaaatggtgaagatggtcgatgatgacaacaacaatcacttttactatggtagttgcttttctt |
27631169 |
T |
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| Q |
201 |
tccctcttccatttgagttt |
220 |
Q |
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|||||||||||||| ||||| |
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| T |
27631168 |
tccctcttccatttcagttt |
27631149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 27625184 - 27625091
Alignment:
| Q |
133 |
gtggtaaatgatgaagatgactgatgatgacagcaacaatcacttctaccatggtagttgtttttctttccctcttccatttgagtttgaaccatgactt |
232 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||| ||| |||||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
27625184 |
gtggtaaatggtgaagatgaccaatgatgacagcaacaatcacttttactatggtaattgtttttct-------ttcaatttgagtttgaaccatgactt |
27625092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 34510976 - 34510883
Alignment:
| Q |
133 |
gtggtaaatgatgaagatgactgatgatgacagcaacaatcacttctaccatggtagttgtttttctttccctcttccatttgagtttgaaccatgactt |
232 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||| ||| |||||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
34510976 |
gtggtaaatggtgaagatgaccaatgatgacagcaacaatcacttttactatggtaattgtttttct-------ttcaatttgagtttgaaccatgactt |
34510884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 34523832 - 34523791
Alignment:
| Q |
192 |
gtttttctttccctcttccatttgagtttgaaccatgacttt |
233 |
Q |
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| T |
34523832 |
gtttttctttccctcttccatctgagtttgaaccatgacttt |
34523791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 27625302 - 27625243
Alignment:
| Q |
3 |
aagagactgaggggcttttaattttccaaatttattttacaagaacaacattattttttg |
62 |
Q |
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|||| ||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| |
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| T |
27625302 |
aagaaactgaggggattttatttttccaaatttattttgtaagaataaaattattttttg |
27625243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 34511089 - 34511035
Alignment:
| Q |
8 |
actgaggggcttttaattttccaaatttattttacaagaacaacattattttttg |
62 |
Q |
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| T |
34511089 |
actgaggggattttatttttccaaatttattttgtaagaataaaattattttttg |
34511035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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