View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4727_high_22 (Length: 247)

Name: NF4727_high_22
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4727_high_22
NF4727_high_22
[»] chr4 (9 HSPs)
chr4 (1-241)||(570070-570310)
chr4 (8-129)||(55505252-55505373)
chr4 (8-136)||(1524630-1524758)
chr4 (84-196)||(3438786-3438898)
chr4 (15-139)||(8187245-8187369)
chr4 (8-55)||(553384-553431)
chr4 (84-139)||(6006148-6006203)
chr4 (17-64)||(7226039-7226086)
chr4 (9-56)||(7307764-7307811)
[»] chr8 (3 HSPs)
chr8 (1-73)||(21235445-21235517)
chr8 (99-193)||(32151068-32151162)
chr8 (16-128)||(34936318-34936430)
[»] chr6 (2 HSPs)
chr6 (12-106)||(12102160-12102254)
chr6 (128-172)||(12102116-12102160)
[»] chr2 (2 HSPs)
chr2 (8-136)||(45245232-45245360)
chr2 (4-129)||(44575638-44575763)
[»] chr3 (3 HSPs)
chr3 (8-127)||(514875-514994)
chr3 (8-139)||(51113928-51114059)
chr3 (8-72)||(51121040-51121104)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 570310 - 570070
Alignment:
Q  1 aagaggcgtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgata 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  570310 aagaggcgtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgata 570211  T
Q  101 ttatcaagaccatcattgagaaagataactgttccacctcgttatcgtttcaacaataacaagagggaactcttcttgggtcatgtatgccttctcggct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  570210 ttatcaagaccatcattgagaaagataactgttccacctcgttaccgtttcaacaacaacaagagggagctcttcttgggtcatgtatgccttctcggct 570111  T
Q  201 agtattttgcatttcttctgctgaagtttgccttctctgct 241  Q
    |||||||||||  |||||||| ||||||| |||||||||||    
T  570110 agtattttgcaactcttctgccgaagttttccttctctgct 570070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 55505252 - 55505373
Alignment:
Q  8 gtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaa 107  Q
    ||||| || ||| ||||||||||||||| ||| || |||||||| |||||    ||  ||||||||||||  | | |||||||||| ||| |||| ||||    
T  55505252 gtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaatggtattttcaa 55505351  T
Q  108 gaccatcattgagaaagataac 129  Q
    | ||||||||||||||||||||    
T  55505352 ggccatcattgagaaagataac 55505373  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 1524630 - 1524758
Alignment:
Q  8 gtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaa 107  Q
    |||||| ||||| ||||||||||||||| |||||| ||||| ||||||| |   || | |||||| |||   |   |||||| ||| ||| |||||||||    
T  1524630 gtgaattatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgcctcaatgctattatcaa 1524729  T
Q  108 gaccatcattgagaaagataactgttcca 136  Q
    |||||||||||||| |||||| |||||||    
T  1524730 gaccatcattgagagagataattgttcca 1524758  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 3438786 - 3438898
Alignment:
Q  84 ttgttgactcgatgatattatcaagaccatcattgagaaagataactgttccacctcgttatcgtttcaacaataacaagagggaactcttcttgggtca 183  Q
    ||||||||  |||| |||| ||||  ||||||||||||||| |||||| |||||||||||||| |||||  |  || ||||||||||| ||| || |||     
T  3438786 ttgttgacgagatggtattttcaaagccatcattgagaaaggtaactgctccacctcgttatcatttcagtagcaaaaagagggaacttttcctgcgtcg 3438885  T
Q  184 tgtatgccttctc 196  Q
    || ||||||||||    
T  3438886 tggatgccttctc 3438898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 8187245 - 8187369
Alignment:
Q  15 atgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaagaccatc 114  Q
    |||||||| |||||||||| | |||||  ||  ||||| ||| |  ||||||||| ||||||    || ||||||||||||||||||| ||||| |||||    
T  8187245 atgtggtaaaaaactgcacgcaactgacagaagtcaatctgaggcgctgctataatgtgcatcctgatgttgttgactcgatgatattttcaaggccatc 8187344  T
Q  115 attgagaaagataactgttccacct 139  Q
      |||||||||||| ||| ||||||    
T  8187345 gctgagaaagataattgtcccacct 8187369  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 553431 - 553384
Alignment:
Q  8 gtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttg 55  Q
    |||||||||||||||||||||||||||| ||| || |||||| |||||    
T  553431 gtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 6006203 - 6006148
Alignment:
Q  84 ttgttgactcgatgatattatcaagaccatcattgagaaagataactgttccacct 139  Q
    ||||||||| |||| ||||  |||| |||||||||||||||||||||| |||||||    
T  6006203 ttgttgacttgatggtatttacaaggccatcattgagaaagataactgctccacct 6006148  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 7226039 - 7226086
Alignment:
Q  17 gtggtagaaaactgcacacgactgagggagatcaatttgaagaactgc 64  Q
    ||||||||||||||||  | |||||| |||||||||||||||||||||    
T  7226039 gtggtagaaaactgcaagcaactgagagagatcaatttgaagaactgc 7226086  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 7307811 - 7307764
Alignment:
Q  9 tgaatcatgtggtagaaaactgcacacgactgagggagatcaatttga 56  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||||||    
T  7307811 tgaagcatgtggtagaaaactgcacgcaactgagggaaatcaatttga 7307764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21235517 - 21235445
Alignment:
Q  1 aagaggcgtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtg 73  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21235517 aagaggcgtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtg 21235445  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 32151162 - 32151068
Alignment:
Q  99 tattatcaagaccatcattgagaaagataactgttccacctcgttatcgtttcaacaataacaagagggaactcttcttgggtcatgtatgcctt 193  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||  |||||   | || || ||| ||||||||||| |||||| |||||||    
T  32151162 tattttcaaggccatcattgagaaagataactgctccacctcgttatgatttcagtgacaaaaaaaggaaactcttcttgcgtcatggatgcctt 32151068  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 34936318 - 34936430
Alignment:
Q  16 tgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaagaccatca 115  Q
    |||||| ||||| ||||||| | |||||||||||||||||| ||||||| |||||||| ||   ||| |||||  ||||||||||   ||||| ||||      
T  34936318 tgtggttgaaaattgcacacaattgagggagatcaatttgaggaactgccataaagtggatgctaatgttgttacctcgatgataacttcaaggccattg 34936417  T
Q  116 ttgagaaagataa 128  Q
    |||||||||||||    
T  34936418 ttgagaaagataa 34936430  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 12102254 - 12102160
Alignment:
Q  12 atcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatca 106  Q
    |||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||    
T  12102254 atcatgtggtagaaaactgcacacaactgagagagagcaatctgaagaactgctataaagtgcttcataatgttgttgactcgatgatattatca 12102160  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 12102160 - 12102116
Alignment:
Q  128 actgttccacctcgttatcgtttcaacaataacaagagggaactc 172  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  12102160 actgttccacctcgttatcgtttcaacaacaaaaagagggaactc 12102116  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 45245232 - 45245360
Alignment:
Q  8 gtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaa 107  Q
    ||||| |||||||||||||| ||||||| ||| |  ||||||||||||| | |||||| | ||||||||   ||| || ||| ||||||| |||| ||||    
T  45245232 gtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctcgatggtattttcaa 45245331  T
Q  108 gaccatcattgagaaagataactgttcca 136  Q
    | ||||| |||| |||||||| |||||||    
T  45245332 ggccatcgttgaaaaagataaatgttcca 45245360  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 44575638 - 44575763
Alignment:
Q  4 aggcgtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatatta 103  Q
    |||| ||||||||||||||||||||||||||| || ||| ||| |||||||||  || ||  |||| ||||||    || || ||| |||| ||||| |     
T  44575638 aggcttgaatcatgtggtagaaaactgcacacaaccgagagagctcaatttgagaaattgtgataatgtgcatcgtgatgttcttgcctcgttgatactt 44575737  T
Q  104 tcaagaccatcattgagaaagataac 129  Q
    ||||| ||||||||||||||| ||||    
T  44575738 tcaaggccatcattgagaaagttaac 44575763  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 514875 - 514994
Alignment:
Q  8 gtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaaga-actgctataaagtgcataaaaatattgttgactcgatgatattatca 106  Q
    ||||| ||||||||  ||||||||||||||||||| ||||||||||| ||||   ||  ||||||||||| | ||| |||||| | | ||| |||| |||    
T  514875 gtgaagcatgtggtgaaaaactgcacacgactgagagagatcaattt-aagaggttgtaataaagtgcattataatgttgttgccccaatggtattttca 514973  T
Q  107 agaccatcattgagaaagata 127  Q
    || ||||||||||||||||||    
T  514974 aggccatcattgagaaagata 514994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 51113928 - 51114059
Alignment:
Q  8 gtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaa 107  Q
    ||||| |||||||||||||| ||||||  ||| || ||||| ||||| |||   || | ||||||||||   ||| |||||| ||| |||||||| ||||    
T  51113928 gtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatattttcaa 51114027  T
Q  108 gaccatcattgagaaagataactgttccacct 139  Q
    | |||||||||||| | ||||| | |||||||    
T  51114028 ggccatcattgagagaaataacagctccacct 51114059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 51121040 - 51121104
Alignment:
Q  8 gtgaatcatgtggtagaaaactgcacacgactgagggagatcaatttgaagaactgctataaagt 72  Q
    ||||| |||||||||||||||||||||| | |||| | |||||| |||| | | |||||||||||    
T  51121040 gtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtattgctataaagt 51121104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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