View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_24 (Length: 243)
Name: NF4727_high_24
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 47908695 - 47908481
Alignment:
| Q |
18 |
tcttttcaaatttacattactagcagcaagactttcatacttgtagcatgtcctcaaatcctcaatttcctatcatatgcttctttcattaaacttgtga |
117 |
Q |
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| T |
47908695 |
tcttttcaaatttacattactagcagcaagactttcatacttgtatcatgtcctcaaatcctcaattttctatcatatgcttctttcattaaacttgtga |
47908596 |
T |
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| Q |
118 |
atcttagcagatttacactacttaattaaataaaaatatataacatgattttaaatattatttacataacacattaaaatcaagttcacccaaaaactat |
217 |
Q |
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| T |
47908595 |
atcttagcagatttacactacttaataaaataaaaatatataacatgattttaaatattatttacataacacattaaaatcaagttcacccaaaaac--t |
47908498 |
T |
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| Q |
218 |
atactattactctgtgc |
234 |
Q |
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| T |
47908497 |
atactattactctgtgc |
47908481 |
T |
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