View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_25 (Length: 238)
Name: NF4727_high_25
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_25 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38643762 - 38643983
Alignment:
| Q |
1 |
aagtgcccctgacttcatcttctcatctctcatcgtcatcaacccagaacttctgttccactttcccatcgtattagaacgaacactattgtatcaatct |
100 |
Q |
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| T |
38643762 |
aagtgcccctaacttcatcttgtcatctctcatcatcatcaacccataacttctgttccactctcccatcatattagaacgaacactattgtatcaatct |
38643861 |
T |
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| Q |
101 |
tcttcttctgagtcaaaatcaccaccacgtattgttgaagaggaatctgtgaaagaggttctatttgaaaaagaaacaccaatttttaaaccccaacaag |
200 |
Q |
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| T |
38643862 |
tcttcttctcagtcaaaatcaccaccacgtattgttgaagaggaatctgtgaaagaggtactatttgaaaaagaaacaccaatttctaaaccccaacaag |
38643961 |
T |
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| Q |
201 |
ttccttatttgacacaagaaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38643962 |
ttccttatttgacacaagaaac |
38643983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 38235272 - 38235381
Alignment:
| Q |
113 |
tcaaaatcaccaccacgtattgttgaagaggaatctgtgaaagaggttctatttgaaaaagaaacaccaatttttaaaccccaacaagttccttatttga |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
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| T |
38235272 |
tcaaaatcaccaccacatattgttgaagaggaatctgtgaaagaagttctatttgaaacagaaacaccaatttccaaaccccaacaagttccaaatttga |
38235371 |
T |
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| Q |
213 |
cacaagaaac |
222 |
Q |
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| T |
38235372 |
cacaagaaac |
38235381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 16903 - 16831
Alignment:
| Q |
132 |
ttgttgaagaggaatctgtgaaagaggttctatttgaaaaagaaacaccaatttttaaaccccaacaagttcc |
204 |
Q |
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|||||| |||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||| |
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| T |
16903 |
ttgttgcagaggaatctgtgaaagaagttctatttgacatagaaacaccaattttcaaaccccaacaagttcc |
16831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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