View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4727_high_30 (Length: 201)

Name: NF4727_high_30
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4727_high_30
NF4727_high_30
[»] chr4 (8 HSPs)
chr4 (15-125)||(43994142-43994252)
chr4 (151-183)||(26497476-26497508)
chr4 (151-183)||(34151084-34151116)
chr4 (151-183)||(36665756-36665788)
chr4 (151-183)||(49316112-49316144)
chr4 (151-183)||(49965176-49965208)
chr4 (155-183)||(3146252-3146280)
chr4 (151-183)||(41485435-41485467)
[»] chr5 (8 HSPs)
chr5 (151-185)||(30985493-30985527)
chr5 (151-183)||(670960-670992)
chr5 (151-183)||(10646992-10647024)
chr5 (151-183)||(35858249-35858281)
chr5 (151-182)||(2849032-2849063)
chr5 (151-182)||(15296058-15296089)
chr5 (151-183)||(7015943-7015975)
chr5 (151-183)||(21119133-21119165)
[»] scaffold0365 (1 HSPs)
scaffold0365 (151-183)||(248-280)
[»] chr8 (6 HSPs)
chr8 (151-183)||(2377876-2377908)
chr8 (151-183)||(4594726-4594758)
chr8 (151-183)||(30591741-30591773)
chr8 (151-183)||(30886727-30886759)
chr8 (151-183)||(34853071-34853103)
chr8 (151-183)||(41160381-41160413)
[»] chr7 (7 HSPs)
chr7 (151-183)||(522940-522972)
chr7 (151-183)||(4580555-4580587)
chr7 (151-183)||(17707351-17707383)
chr7 (151-183)||(45300988-45301020)
chr7 (151-182)||(37467720-37467751)
chr7 (151-180)||(7792527-7792556)
chr7 (151-183)||(32813427-32813459)
[»] chr6 (9 HSPs)
chr6 (151-183)||(2525518-2525550)
chr6 (151-183)||(10839963-10839995)
chr6 (151-183)||(29918583-29918615)
chr6 (152-183)||(34782601-34782632)
chr6 (151-181)||(5059353-5059383)
chr6 (153-183)||(5271980-5272010)
chr6 (153-183)||(30599374-30599404)
chr6 (151-183)||(25085838-25085870)
chr6 (151-183)||(26046437-26046469)
[»] chr3 (8 HSPs)
chr3 (151-183)||(19286686-19286718)
chr3 (151-183)||(41949833-41949865)
chr3 (153-183)||(21452887-21452917)
chr3 (153-183)||(21458061-21458091)
chr3 (154-183)||(33050257-33050286)
chr3 (154-183)||(50901262-50901291)
chr3 (151-183)||(21912449-21912481)
chr3 (151-183)||(51390194-51390226)
[»] chr2 (8 HSPs)
chr2 (151-183)||(12371330-12371362)
chr2 (151-183)||(35852252-35852284)
chr2 (151-183)||(37425735-37425767)
chr2 (151-182)||(35467270-35467301)
chr2 (153-183)||(9305306-9305336)
chr2 (154-183)||(11709842-11709871)
chr2 (155-183)||(32092588-32092616)
chr2 (151-183)||(42453766-42453798)
[»] chr1 (4 HSPs)
chr1 (151-183)||(14544642-14544674)
chr1 (151-183)||(50581200-50581232)
chr1 (155-183)||(8700230-8700258)
chr1 (151-183)||(43055951-43055983)
[»] scaffold0024 (1 HSPs)
scaffold0024 (153-183)||(92851-92881)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 43994252 - 43994142
Alignment:
Q  15 caaaggagaacaatgtgggatatggttggagaagactcaccttggcagcgtaagcttatgatcgcggtggtggaaaaaacggaagtagggttttctgaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43994252 caaaggagaacaatgtgggatatggttggagaagactcaccttggcagcgtaagcttatgatcgcggtggtggaaaaaacggaagtagggttttctgaaa 43994153  T
Q  115 atttctattta 125  Q
    |||||||||||    
T  43994152 atttctattta 43994142  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 26497508 - 26497476
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  26497508 agggtccgtttggttcgagaattaggaggggag 26497476  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 34151116 - 34151084
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  34151116 agggtccgtttggttcgagaattaggaggggag 34151084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 36665756 - 36665788
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  36665756 agggtccgtttggttcgagaattaggaggggag 36665788  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 49316112 - 49316144
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  49316112 agggtccgtttggttcgagaattaggaggggag 49316144  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 49965176 - 49965208
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  49965176 agggtccgtttggttcgagaattaggaggggag 49965208  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 3146252 - 3146280
Alignment:
Q  155 tccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||    
T  3146252 tccgtttggttcgagaattaggaggggag 3146280  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 41485435 - 41485467
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||| |||||||||||||||||    
T  41485435 agggtccgtttggtttgagaattaggaggggag 41485467  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 30985527 - 30985493
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggagtg 185  Q
    |||||||||||||||||||||||||||||||||||    
T  30985527 agggtccgtttggttcgagaattaggaggggagtg 30985493  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 670992 - 670960
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  670992 agggtccgtttggttcgagaattaggaggggag 670960  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 10647024 - 10646992
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  10647024 agggtccgtttggttcgagaattaggaggggag 10646992  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 35858249 - 35858281
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  35858249 agggtccgtttggttcgagaattaggaggggag 35858281  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 2849032 - 2849063
Alignment:
Q  151 agggtccgtttggttcgagaattaggagggga 182  Q
    ||||||||||||||||||||||||||||||||    
T  2849032 agggtccgtttggttcgagaattaggagggga 2849063  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 15296089 - 15296058
Alignment:
Q  151 agggtccgtttggttcgagaattaggagggga 182  Q
    ||||||||||||||||||||||||||||||||    
T  15296089 agggtccgtttggttcgagaattaggagggga 15296058  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 7015975 - 7015943
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||||||||||||| |||||||    
T  7015975 agggtccgtttggttcgagaattagaaggggag 7015943  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 21119133 - 21119165
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||| ||||    
T  21119133 agggtccgtttggttcgagaattaggagaggag 21119165  T

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Target: scaffold0365 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 248 - 280
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  248 agggtccgtttggttcgagaattaggaggggag 280  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 2377876 - 2377908
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  2377876 agggtccgtttggttcgagaattaggaggggag 2377908  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 4594726 - 4594758
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  4594726 agggtccgtttggttcgagaattaggaggggag 4594758  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 30591773 - 30591741
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  30591773 agggtccgtttggttcgagaattaggaggggag 30591741  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 30886727 - 30886759
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  30886727 agggtccgtttggttcgagaattaggaggggag 30886759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 34853103 - 34853071
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  34853103 agggtccgtttggttcgagaattaggaggggag 34853071  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 41160413 - 41160381
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||| ||||||||||||||    
T  41160413 agggtccgtttggttcgataattaggaggggag 41160381  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 522972 - 522940
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  522972 agggtccgtttggttcgagaattaggaggggag 522940  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 4580555 - 4580587
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  4580555 agggtccgtttggttcgagaattaggaggggag 4580587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 17707383 - 17707351
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  17707383 agggtccgtttggttcgagaattaggaggggag 17707351  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 45301020 - 45300988
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  45301020 agggtccgtttggttcgagaattaggaggggag 45300988  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 37467720 - 37467751
Alignment:
Q  151 agggtccgtttggttcgagaattaggagggga 182  Q
    ||||||||||||||||||||||||||||||||    
T  37467720 agggtccgtttggttcgagaattaggagggga 37467751  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 7792556 - 7792527
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggg 180  Q
    ||||||||||||||||||||||||||||||    
T  7792556 agggtccgtttggttcgagaattaggaggg 7792527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 32813459 - 32813427
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    ||||| |||||||||||||||||||||||||||    
T  32813459 agggttcgtttggttcgagaattaggaggggag 32813427  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 2525550 - 2525518
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  2525550 agggtccgtttggttcgagaattaggaggggag 2525518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 10839995 - 10839963
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  10839995 agggtccgtttggttcgagaattaggaggggag 10839963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 29918583 - 29918615
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  29918583 agggtccgtttggttcgagaattaggaggggag 29918615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 34782601 - 34782632
Alignment:
Q  152 gggtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||||||||||||||||||||    
T  34782601 gggtccgtttggttcgagaattaggaggggag 34782632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 5059353 - 5059383
Alignment:
Q  151 agggtccgtttggttcgagaattaggagggg 181  Q
    |||||||||||||||||||||||||||||||    
T  5059353 agggtccgtttggttcgagaattaggagggg 5059383  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 5271980 - 5272010
Alignment:
Q  153 ggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||    
T  5271980 ggtccgtttggttcgagaattaggaggggag 5272010  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 183
Target Start/End: Complemental strand, 30599404 - 30599374
Alignment:
Q  153 ggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||    
T  30599404 ggtccgtttggttcgagaattaggaggggag 30599374  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 25085838 - 25085870
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||||||||||||||| |||||    
T  25085838 agggtccgtttggttcgagaattaggatgggag 25085870  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 26046437 - 26046469
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||| ||||||||||||||||||||    
T  26046437 agggtccgtttgattcgagaattaggaggggag 26046469  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 19286718 - 19286686
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  19286718 agggtccgtttggttcgagaattaggaggggag 19286686  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 41949833 - 41949865
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  41949833 agggtccgtttggttcgagaattaggaggggag 41949865  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 21452887 - 21452917
Alignment:
Q  153 ggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||    
T  21452887 ggtccgtttggttcgagaattaggaggggag 21452917  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 21458061 - 21458091
Alignment:
Q  153 ggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||    
T  21458061 ggtccgtttggttcgagaattaggaggggag 21458091  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 33050286 - 33050257
Alignment:
Q  154 gtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||||||||||||||||||    
T  33050286 gtccgtttggttcgagaattaggaggggag 33050257  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 50901262 - 50901291
Alignment:
Q  154 gtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||||||||||||||||||    
T  50901262 gtccgtttggttcgagaattaggaggggag 50901291  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 21912449 - 21912481
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    ||||||| |||||||||||||||||||||||||    
T  21912449 agggtccatttggttcgagaattaggaggggag 21912481  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 51390194 - 51390226
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||| ||||||||||||||||||||||||||    
T  51390194 agggtctgtttggttcgagaattaggaggggag 51390226  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 12371330 - 12371362
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  12371330 agggtccgtttggttcgagaattaggaggggag 12371362  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 35852252 - 35852284
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  35852252 agggtccgtttggttcgagaattaggaggggag 35852284  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 37425735 - 37425767
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  37425735 agggtccgtttggttcgagaattaggaggggag 37425767  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 35467301 - 35467270
Alignment:
Q  151 agggtccgtttggttcgagaattaggagggga 182  Q
    ||||||||||||||||||||||||||||||||    
T  35467301 agggtccgtttggttcgagaattaggagggga 35467270  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 183
Target Start/End: Complemental strand, 9305336 - 9305306
Alignment:
Q  153 ggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||    
T  9305336 ggtccgtttggttcgagaattaggaggggag 9305306  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 11709871 - 11709842
Alignment:
Q  154 gtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||||||||||||||||||    
T  11709871 gtccgtttggttcgagaattaggaggggag 11709842  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 32092588 - 32092616
Alignment:
Q  155 tccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||    
T  32092588 tccgtttggttcgagaattaggaggggag 32092616  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 42453798 - 42453766
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    ||||||||||||||||||||||||||| |||||    
T  42453798 agggtccgtttggttcgagaattaggaagggag 42453766  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 14544674 - 14544642
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  14544674 agggtccgtttggttcgagaattaggaggggag 14544642  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 50581232 - 50581200
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||||    
T  50581232 agggtccgtttggttcgagaattaggaggggag 50581200  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 8700258 - 8700230
Alignment:
Q  155 tccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||    
T  8700258 tccgtttggttcgagaattaggaggggag 8700230  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 43055983 - 43055951
Alignment:
Q  151 agggtccgtttggttcgagaattaggaggggag 183  Q
    |||||| ||||||||||||||||||||||||||    
T  43055983 agggtctgtttggttcgagaattaggaggggag 43055951  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 92851 - 92881
Alignment:
Q  153 ggtccgtttggttcgagaattaggaggggag 183  Q
    |||||||||||||||||||||||||||||||    
T  92851 ggtccgtttggttcgagaattaggaggggag 92881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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