View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_5 (Length: 538)
Name: NF4727_high_5
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Complemental strand, 8797615 - 8797102
Alignment:
| Q |
20 |
acttttttaccataaaacccgggcgggtgacccttgtgtgaaacaaaaacatcttcaatattaatatcattcattcaagtgagagaaagaaaaatctgac |
119 |
Q |
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| T |
8797615 |
acttttttaccataaaacccgggcgggtgacccttgtgtgaaacaaaaacatcttcaatattaatatcattca----agtgagagaaagaaaaatctgac |
8797520 |
T |
|
| Q |
120 |
ctagaaggcaaaaagggtaataaaaaggaagtgttattgtggctaagtgagtgagt--------attaattcaatggagggtagttctaatggaagttgt |
211 |
Q |
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| T |
8797519 |
ctagaaggcaaaaagggtaataaaaaggaagtgttattgtggctaagtgagtgagtgagtgagtattaattcaatggagggtagttctaatggaagttgt |
8797420 |
T |
|
| Q |
212 |
tcttatgtgatgggtgcttttggagaaaacagtggtgggctatgtcctccaatgatgatgatgcctttagtcacttcatctcatcataatgctcatcatc |
311 |
Q |
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| T |
8797419 |
tcttatgtgatgggtgcttttggagaaaacagtggtgggctatgtcctccaatgatgatgatgcctttagtcacttcatctcatcataatgctcatcatc |
8797320 |
T |
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| Q |
312 |
caataaattccaataacaacaatactaatgcaaacaacacaaccggtcttttccttcctatccctaattccactaacaataataacaatcactacaccaa |
411 |
Q |
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| T |
8797319 |
caataaattccaataacaacaatactaatgcaaacaacacaaccggtcttttccttcctatccctaattccactaacaataataacaatcactacaccaa |
8797220 |
T |
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| Q |
412 |
ctgtaataacaacacctcttctatcatgcttcaaaataaccatcaaaacactcctggtttaggttactatttcatggacaacatcaacaaccatggaagc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8797219 |
ctgtaataacaacacctcttctatcatgcttcaaaataaccatcaaaacactcctggtttaggttactatttcatggacaacatcaacaaccatggaagc |
8797120 |
T |
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| Q |
512 |
tcttcttcctcttcttct |
529 |
Q |
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|||||||||||||||||| |
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| T |
8797119 |
tcttcttcctcttcttct |
8797102 |
T |
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