View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_high_9 (Length: 400)
Name: NF4727_high_9
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 38629311 - 38628934
Alignment:
| Q |
8 |
gattattcttcaacctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaagcaccacagttgggtttatgctctgtgactgtggtggtgg |
107 |
Q |
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| T |
38629311 |
gattattcttcaacctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaagcaccacagttgggtttatgctctgtgactgtggtggtgg |
38629212 |
T |
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| Q |
108 |
acacttagattttaacaacctagcaaagttagggtccatagaacgatcttgagtaaaagttgaattgaaagagtataatcggtttgagaaagaaggacaa |
207 |
Q |
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| T |
38629211 |
acacttagattttaacaacctagcaaagttagggtccatagaaggatcttgaggaaaagttaaattgaaagagtataatcgttttgagaatgaagaacaa |
38629112 |
T |
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| Q |
208 |
cgtgagacaccaatagaatgagctccagaaagtgtaaccatttcatcagctgacaaaccttttctgtcaaaattatcgataagttgctctgcattgaaat |
307 |
Q |
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| T |
38629111 |
tgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgcactgaaag |
38629012 |
T |
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| Q |
308 |
ttggtggtggtagattttgtgtgacttcgtcgaagatagatactcgaccatctctgcgtcctgatgggactgagtagt |
385 |
Q |
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| T |
38629011 |
ttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgatggtactgagtagt |
38628934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 91 - 385
Target Start/End: Original strand, 38697053 - 38697347
Alignment:
| Q |
91 |
tgtgactgtggtggtggacacttagattttaacaacctagcaaagttagggtccatagaacgatcttgagtaaaagttgaattgaaagagtataatcggt |
190 |
Q |
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| T |
38697053 |
tgtgactgtggtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatcttgaggaaaagttgcattgaaagagtataatcgtt |
38697152 |
T |
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| Q |
191 |
ttgagaaagaaggacaacgtgagacaccaatagaatgagctccagaaagtgtaaccatttcatcagctgacaaaccttttctgtcaaaattatcgataag |
290 |
Q |
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| T |
38697153 |
ttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataag |
38697252 |
T |
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| Q |
291 |
ttgctctgcattgaaatttggtggtggtagattttgtgtgacttcgtcgaagatagatactcgaccatctctgcgtcctgatgggactgagtagt |
385 |
Q |
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| T |
38697253 |
ttgctccgcactgaaagttggtggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgatggtactgagtagt |
38697347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 38696951 - 38697008
Alignment:
| Q |
10 |
ttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaa |
67 |
Q |
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| T |
38696951 |
ttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaa |
38697008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 14257616 - 14257539
Alignment:
| Q |
193 |
gagaaagaaggacaacgtgagacaccaatagaatgagctccagaaagtgtaaccatttcatcagctgacaaacctttt |
270 |
Q |
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| T |
14257616 |
gagaaagaagaacaatgtgatacaccaattgaatgtgctcctgagagtgtaaccatttcatcaattgacaaacctttt |
14257539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 20516639 - 20516595
Alignment:
| Q |
13 |
ttcttcaacctcttatagtacatgttgtccaaatcattaggcgtg |
57 |
Q |
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| T |
20516639 |
ttcttcaacctcttatagtacatgttgtccaaatcaataggcgtg |
20516595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 30651991 - 30652088
Alignment:
| Q |
152 |
gatcttgagtaaaagttgaattgaaagagtataatcggtttgagaaagaaggacaacgtgagacaccaatagaatgagctccagaaagtgtaaccatttc |
251 |
Q |
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| T |
30651991 |
gatcttgagaaaaggtttcaatgaaagagtataaccaatttgagaaagaa---caatgcgagactccaatagaacgagctccggaaagtgtaaccatttc |
30652087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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