View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_16 (Length: 295)
Name: NF4727_low_16
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 21237080 - 21236823
Alignment:
| Q |
7 |
atgagaccctcaggaggtggtttccaatgctttaaaattcaggatatatatgtgttagagcccgtaggttggcaaaaagtaacaaactcatcatgcaatg |
106 |
Q |
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| T |
21237080 |
atgagaccctcaggaggtggtttccaatgctttaaaattcaagatatatatgtgttagagcccgtaggttggcaaaaagtaacaaactcatcatgcaatg |
21236981 |
T |
|
| Q |
107 |
tctgagtcttcctcagcacttcatgaatctaactaggttgttcctgaaaaatactattatttctccagcaccaagcctcccataattcagcaagaaataa |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21236980 |
tctgagtcttcctcagcacttcatgaatctgactaggttgttcctggaaaatactattatttctccagcaccaagcctcccataattcagcaagaaataa |
21236881 |
T |
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| Q |
207 |
gagcgatacagtaccacatgccatctgcttgacccaagttgtggtttctgttagggag |
264 |
Q |
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| T |
21236880 |
gagcgatacagtaccacatgccatctgcttgacccaagttgtggtttcagttagggag |
21236823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 34900534 - 34900785
Alignment:
| Q |
6 |
aatgagaccctcaggaggtggtttccaatgctttaaaattcaggatatatatgtgttagagcccgtaggttggcaaaaagtaacaaactcatcatgcaat |
105 |
Q |
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||||||||||||| ||||||||||||||||| |||||||| || |||||||||||| ||||||| ||| ||||| || ||||| ||||||||| |
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| T |
34900534 |
aatgagaccctcatgaggtggtttccaatgcactaaaattcggg-------tgtgttagagcctgtaggttcgcagaaagtgacgaactcgtcatgcaat |
34900626 |
T |
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| Q |
106 |
gtctgagtcttcctcagcacttcatgaatctaactaggttgttcctgaaaaatactattatttctccagcaccaagcctcccataattcagcaagaaata |
205 |
Q |
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| T |
34900627 |
gcctgagtcttgcccaccttgtcatgattctgacaaggttgttcctaaaaaatactactgtttcttcagcaccaagtctgccataaacctgcaagaaata |
34900726 |
T |
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| Q |
206 |
agagcgatacagtaccacatgccatctgcttgacccaagttgtggtttctgttagggag |
264 |
Q |
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||||||||| ||||||||||||||| | ||||||| | ||||||||||||||||||||| |
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| T |
34900727 |
agagcgatagagtaccacatgccatttacttgacctaggttgtggtttctgttagggag |
34900785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 19192880 - 19193108
Alignment:
| Q |
7 |
atgagaccctcaggaggtggtttccaatgctttaaaattcaggatatatatgtgttagagcccgtaggttggcaaaaagtaacaaactcatcatgcaatg |
106 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||| ||| |||||| ||||||| || |||||||||| || |||| |||||||||| |
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| T |
19192880 |
atgagactgtcaggaggtggtttccaatgcaataaaatttgatccatagatgtgtcagagcccatatattggcaaaaaacaatgaacttgtcatgcaatg |
19192979 |
T |
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| Q |
107 |
tctgagtcttcctcagcacttcatgaatctaactaggttgt--tcctgaaaaatactattatttctccagcaccaagcctcccataattcagcaagaaat |
204 |
Q |
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|||||||||| ||| |||||| ||||||| | ||| ||| || | ||||||||||||||||||||| ||||| || | |||||| || ||| ||| |
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| T |
19192980 |
tctgagtctttgtcaacacttcttgaatctgccaaggatgtgatcttcaaaaatactattatttctccaacaccaggcatgccataaatctaaaagtaat |
19193079 |
T |
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| Q |
205 |
aagagcgatacagtaccacatgccatctg |
233 |
Q |
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|||| || || ||||||||| |||||||| |
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| T |
19193080 |
aagaacgttagagtaccacaagccatctg |
19193108 |
T |
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