View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_19 (Length: 281)
Name: NF4727_low_19
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_19 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 39485793 - 39485522
Alignment:
| Q |
10 |
attatactccttactgatttattataccaacttttatttgttttacacaagtcagattcctttcttattcttgtgtgtcaatctaatctaattgattatg |
109 |
Q |
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| T |
39485793 |
attatactccttactgatttattataccaacttttatttgttttacacaattcagattcctttcttattcttgtgtgtcaatctaatctaattgattatg |
39485694 |
T |
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| Q |
110 |
attgtatatcattaacgtcgaatctaattcagcttcagattagattacatatgggttaacgggtaagcaccaaagtaatatttcaaggaaaccttcgagc |
209 |
Q |
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| T |
39485693 |
attgtatatcattaacgtcgaatctaattcagcttcagattagattacatatgggttaactggtaagcaccaaagtaatatttcaaggaaaccttcgagc |
39485594 |
T |
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| Q |
210 |
tacattgtccagagcagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcct |
281 |
Q |
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| T |
39485593 |
tacattgtccagagcagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcct |
39485522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 39478590 - 39478327
Alignment:
| Q |
13 |
atactccttactgatttattataccaacttttatttgttttacacaagtcagattcctttcttattcttgtgtgtcaatctaatctaattgattatgatt |
112 |
Q |
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| T |
39478590 |
atactccttactgatttatcatatgaacttatatttgttttacacaagtcacattccattcttattcttgtgtgtcaatctaatctaattgataataatt |
39478491 |
T |
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| Q |
113 |
gtatatcattaacgtcgaatctaattcagcttcagattagattacatatgggttaacgggtaagcaccaa---agtaatatttcaaggaaaccttcgagc |
209 |
Q |
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| T |
39478490 |
atatatcataaactttgaattt------gatgcagatgagattacatattg--taacaggtaagcaccaatgtaataataattcaaggttgccttcgagc |
39478399 |
T |
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| Q |
210 |
tacattgtccagagcagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcct |
281 |
Q |
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| T |
39478398 |
cacattgtccagagcagtcgcaaaaggtgtcaacaatttccttaagcttctcagcttgactaaccaaagcct |
39478327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 39474618 - 39474354
Alignment:
| Q |
13 |
atactccttactgatttattataccaacttttatttgttttacacaagtcagattcctttcttattcttgtgtgtcaatctaatctaattgattatgatt |
112 |
Q |
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| T |
39474618 |
atactccttactgatttatcatatgaacttgtatttgttttacacaagtcacattccattcttattcttgtgtgtcaatctaatctaattgataatagtt |
39474519 |
T |
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| Q |
113 |
gtatatcattaacgtcgaatctaattcagcttcagattagattacatatgggttaacgggtaagcaccaaagtaatatttcaaggaaaccttcgagc--- |
209 |
Q |
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| T |
39474518 |
atatatcataaactttgaatct------gatgcagatgagattacatattg--taacaggtaagcaccaatgtaataattcaaggatgccttcaggccac |
39474427 |
T |
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| Q |
210 |
-tacattgtccagagcagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcct |
281 |
Q |
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| T |
39474426 |
attcattatccagagcagtcgcaaaaggtgtcaacaatttccttaagcttctcagcttgagtaaccaaagcct |
39474354 |
T |
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