View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_2 (Length: 706)
Name: NF4727_low_2
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 9421406 - 9421777
Alignment:
| Q |
12 |
atgaagagtcttctaannnnnnnatacagtatatgaagagtcttctatatagtaaagttatcaagtgaacatttaagaacaaagcatgatagcgcgtgca |
111 |
Q |
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| T |
9421406 |
atgaagagtcttctaatttttttatacagtatatgaagagtcttctatatagtaaagttatcaagtgaacatttaagagcaaagcatgatagcgcgtgca |
9421505 |
T |
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| Q |
112 |
acaaaaactttataggagcatacttttccaagatttcgtcatgcattcgtggcggcggagctccaatgatttgtccaaaaacaacaaaaattaaaactta |
211 |
Q |
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| T |
9421506 |
acaaaaactttataggagcatacttttccaagatttcgtcatgcattcgtggcggcggagctccaatgatttctccaaaaacaacaaaaattaaaactta |
9421605 |
T |
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| Q |
212 |
cccatttatttatct---ccccccactaaacaaaatcattaccaccaattaataaccataatacctattatttatccgttatatacggtcctagtagagt |
308 |
Q |
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| T |
9421606 |
cccatttatttatctcccccccccactaaacaaaatcattaccaccaattaataaccataatacctattatttatccgttacatacggtcctagtagagt |
9421705 |
T |
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| Q |
309 |
attttaatctcatgtgtaaagtatgtttacattacataactataacggttatgatatcattttcatttcaac |
380 |
Q |
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| T |
9421706 |
attttaatctcatgtgtaaagtatgtttacattacataactataacggttatgatttcattttcatttcaac |
9421777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 525 - 692
Target Start/End: Original strand, 9421917 - 9422084
Alignment:
| Q |
525 |
gaaacatgtcaaccaacattgataccctctggatttttgctcttgcttccaaatgcacacaagaaaacattgcttactctcttttgatcatggctttact |
624 |
Q |
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| T |
9421917 |
gaaacatgtcaaccaacattgacaacctctggatttttgctcttgcttccaaatgcacacaagaaaacattgcttactctcttttgatcatggctttact |
9422016 |
T |
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| Q |
625 |
ttggataaccatgactttcttttattggtctcaccctggtggtcctgcttggggcaagtactattatt |
692 |
Q |
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| T |
9422017 |
ttggataaccatgactttcttttattggtctcaccctggtggtcctgcttggggcaagtactattatt |
9422084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 410 - 458
Target Start/End: Original strand, 9421807 - 9421855
Alignment:
| Q |
410 |
cctatatatattcccctcaaccaacctcttacttactcacctcaccaca |
458 |
Q |
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| T |
9421807 |
cctatatatattcccctcaaccaacctcttacttactcacctcaccaca |
9421855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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