View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_20 (Length: 262)
Name: NF4727_low_20
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_20 |
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| [»] scaffold0496 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 10878978 - 10879207
Alignment:
| Q |
20 |
atcatgagtattgatgatgaactatgggatattattgaagatggtattgagattgctgttgataaagaaggaatggcacgtgacagaaatagtcttactg |
119 |
Q |
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| T |
10878978 |
atcatgagtattgatgatgaactatgggatattattgaagatggtattgagattgctgttgataaagaaggaatggcacgtgacagaaatagtcttactg |
10879077 |
T |
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| Q |
120 |
aggctgagaagaagatctacagaaagcatcatagggtgcgtggaagtcttgtagaagctataccttactcaaaatatgtgaagattgtcaacaaatcctc |
219 |
Q |
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| T |
10879078 |
aggctgagaagaagatctacagaaagcatcatagggtgcgtggaagtcttgtagaagctataccttactcaaaatatgtgaagattgtcaacaaatcctc |
10879177 |
T |
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| Q |
220 |
tgccaaaaccatctttgaatctctgtgctc |
249 |
Q |
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| T |
10879178 |
tgccaaaaccatctttgaatctctgtgctc |
10879207 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 15960529 - 15960561
Alignment:
| Q |
32 |
gatgatgaactatgggatattattgaagatggt |
64 |
Q |
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| T |
15960529 |
gatgatgaactatgggatattcttgaagatggt |
15960561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 249
Target Start/End: Complemental strand, 11048 - 10856
Alignment:
| Q |
57 |
aagatggtattgagattgctgttgataaagaaggaatggcacgtgacagaaatagtcttactgaggctgagaagaagatctacagaaagcatcatagggt |
156 |
Q |
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| T |
11048 |
aagatgatattgagtttgaagttgatgaagaagaaatgacaagtgacagaaatagtctaactgaggctcattagaagttctacggaaagcatcatagggt |
10949 |
T |
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| Q |
157 |
gcgtggaagtcttgtagaagctataccttactcaaaatatgtgaagattgtcaacaaatcctctgccaaaaccatctttgaatctctgtgctc |
249 |
Q |
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| T |
10948 |
gcatagaattcttatagatgttctacctcattcagaatatttgaagattgtcaataggtctactgtcaagaccatatttgaatctctgtgctc |
10856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 13262798 - 13262726
Alignment:
| Q |
20 |
atcatgagtattgatgatgaactatgggatattattgaagatggtattgagattgctgttgataaagaaggaa |
92 |
Q |
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| T |
13262798 |
atcatgggtattgatgatgaactttgggatattttagaagatggttttgacattcctctagatgaagaaggaa |
13262726 |
T |
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