View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_21 (Length: 252)
Name: NF4727_low_21
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 15801285 - 15801059
Alignment:
| Q |
8 |
gacatcatcaagtataacgagtgcccgtttcgtgcaaagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgtttta |
107 |
Q |
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| T |
15801285 |
gacatcatcaagtataacaagtgcccgtttcgtgcaaagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgtttta |
15801186 |
T |
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| Q |
108 |
aggatatctgaaagaagttgttcttgtaaatcaatttgccccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801185 |
aggatatctgaaagaagttgttcttgtaaatcaatttgccccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcat |
15801086 |
T |
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| Q |
208 |
aacaaagattattgtagacgactttgg |
234 |
Q |
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| T |
15801085 |
aacaaagattattgtagacgactttgg |
15801059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 3313150 - 3312925
Alignment:
| Q |
9 |
acatcatcaagtataacgagtgcccgtttcgtgcaaagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaa |
108 |
Q |
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||||||||||||| ||| ||||||||||| ||| ||||||||| || |||||||||||||| |||||||| |||||||||||| || |||||||| | |
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| T |
3313150 |
acatcatcaagtacaacaagtgcccgttttgtgacaagtcgttccttaatcatagcttttccaaactcaacactatgcacctttatcttccttgttttga |
3313051 |
T |
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| Q |
109 |
ggatatctgaaagaagttgttcttgtaaatcaatttgccccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcata |
208 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3313050 |
ggatatctgaaagaagttgttcttgtaaatcgattctacccctatctttctcccaaacttctctaatattagcaaggaagctttgatcttcaaattcata |
3312951 |
T |
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| Q |
209 |
acaaagattattgtagacgactttgg |
234 |
Q |
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||||||||||||||||| |||||||| |
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| T |
3312950 |
acaaagattattgtagatgactttgg |
3312925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 3393395 - 3393585
Alignment:
| Q |
44 |
aagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttgttcttgtaaatcaatt |
143 |
Q |
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|||||||| ||||||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
3393395 |
aagtcgttgcttgatcatagcttttccttgctcaacactaagcacctttatctttcttgttttcaggatatctgaaagaagttgttcttgtaaatcgatt |
3393494 |
T |
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| Q |
144 |
tgccccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagacgactttgg |
234 |
Q |
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| T |
3393495 |
ctgcccctatctttctcccaaacttctctaatattagcaacgaagctttgatcttcaaattcataacaaagatcattgtatatgactttgg |
3393585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 3362478 - 3362298
Alignment:
| Q |
54 |
ttgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaaggatatctgaaagaagttgttcttgtaaatcaatttgccccctct |
153 |
Q |
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|||||||||| |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||| | |
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| T |
3362478 |
ttgatcatagtttttccttgctcaacactaagcacctttatctttcttgttttgaggatatctgaaagaaattgttcttgtaaatcgattctgcccctat |
3362379 |
T |
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| Q |
154 |
ctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcataacaaagattattgtagacgactttgg |
234 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
3362378 |
ctttctcccaaacttctctaatattagcaaggaagctttgattttcaaattcataacaaagatcattgtagatgactttgg |
3362298 |
T |
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