View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4727_low_28 (Length: 237)

Name: NF4727_low_28
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4727_low_28
NF4727_low_28
[»] chr1 (2 HSPs)
chr1 (71-221)||(26826498-26826648)
chr1 (1-48)||(46545098-46545145)
[»] chr2 (1 HSPs)
chr2 (1-49)||(37440437-37440485)
[»] chr7 (2 HSPs)
chr7 (1-48)||(21688797-21688844)
chr7 (1-49)||(15964179-15964227)
[»] chr3 (1 HSPs)
chr3 (2-53)||(35092218-35092269)
[»] chr5 (1 HSPs)
chr5 (1-49)||(19288094-19288142)
[»] chr8 (1 HSPs)
chr8 (1-48)||(18887720-18887767)
[»] chr4 (2 HSPs)
chr4 (1-48)||(4889931-4889978)
chr4 (1-48)||(29515306-29515353)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 26826648 - 26826498
Alignment:
Q  71 gatcttgctcaacatgcaatatgaaaatccaccatcgcgtctactcgacaccaacgcaacgatcaattcaatctttctaaacttgctactcggtttttga 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||    
T  26826648 gatcttgctcaacatgcaatatgaaaatccaccatcgcgtctactcgacaccgacgcaacgatcaattcaatcgttctacacttgctactcggttttgga 26826549  T
Q  171 gacgaatttcaacgatcttggcagcttcttccatatccgaaggtaacataa 221  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26826548 gacaaatttcaacgatcttggcagtttcttccatatccgaaggtaacataa 26826498  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46545145 - 46545098
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 48  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  46545145 agtaatgcaattttgaattggttagtaaattgaggaattcttgtagtg 46545098  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37440485 - 37440437
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 49  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  37440485 agtaatgcaattttgaattggttagtaaattgaggaattcttgtagtgt 37440437  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21688797 - 21688844
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 48  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  21688797 agtaatgcaattttgaattggttagtaatttgagaaattcttgtagtg 21688844  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15964227 - 15964179
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 49  Q
    |||||||||||||||||||| ||||||||||| | |||| |||||||||    
T  15964227 agtaatgcaattttgaattggttagtaaattggggaattcttgtagtgt 15964179  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 35092218 - 35092269
Alignment:
Q  2 gtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgttttt 53  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||| ||||    
T  35092218 gtaatgcaattttgaattggttagtaaattgggaaattcttgtagtgatttt 35092269  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19288094 - 19288142
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 49  Q
    ||||||| |||||||||||||||||||||| ||| |||| |||||||||    
T  19288094 agtaatgtaattttgaattgattagtaaatagaggaattcttgtagtgt 19288142  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18887720 - 18887767
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 48  Q
    |||||||||||||||||||| ||||||||| | |||||| ||||||||    
T  18887720 agtaatgcaattttgaattggttagtaaatcgggaaattcttgtagtg 18887767  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4889931 - 4889978
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 48  Q
    |||||||||||||||||||| ||||||||||| | |||| ||||||||    
T  4889931 agtaatgcaattttgaattggttagtaaattggggaattcttgtagtg 4889978  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29515306 - 29515353
Alignment:
Q  1 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 48  Q
    ||||||| |||||||||||| ||||||||||||| |||| ||||||||    
T  29515306 agtaatgtaattttgaattggttagtaaattgaggaattcttgtagtg 29515353  T

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