View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4727_low_29 (Length: 237)

Name: NF4727_low_29
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4727_low_29
NF4727_low_29
[»] chr7 (5 HSPs)
chr7 (1-222)||(11608249-11608470)
chr7 (1-121)||(12866625-12866744)
chr7 (9-126)||(18775814-18775929)
chr7 (3-43)||(670312-670352)
chr7 (60-92)||(766316-766348)
[»] chr8 (5 HSPs)
chr8 (1-121)||(27533628-27533748)
chr8 (1-99)||(31014168-31014265)
chr8 (27-116)||(20475153-20475242)
chr8 (27-108)||(20474452-20474533)
chr8 (4-87)||(12564859-12564943)
[»] chr2 (3 HSPs)
chr2 (9-93)||(12496268-12496354)
chr2 (20-126)||(7706461-7706567)
chr2 (3-43)||(29986445-29986485)
[»] chr4 (5 HSPs)
chr4 (1-118)||(50394159-50394276)
chr4 (27-121)||(48747317-48747411)
chr4 (9-117)||(21556045-21556153)
chr4 (12-52)||(13276515-13276555)
chr4 (48-101)||(12590871-12590924)
[»] chr6 (6 HSPs)
chr6 (1-126)||(34388332-34388456)
chr6 (56-121)||(12622824-12622889)
chr6 (65-121)||(2361002-2361058)
chr6 (1-117)||(24319197-24319312)
chr6 (1-74)||(33652763-33652836)
chr6 (8-52)||(9228017-9228061)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-107)||(1813-1919)
[»] chr1 (4 HSPs)
chr1 (1-121)||(36976403-36976523)
chr1 (59-121)||(30095805-30095867)
chr1 (27-124)||(27451848-27451945)
chr1 (1-121)||(50577156-50577276)
[»] scaffold0674 (1 HSPs)
scaffold0674 (1-107)||(4966-5072)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-107)||(18312-18418)
[»] chr3 (3 HSPs)
chr3 (1-43)||(32197352-32197394)
chr3 (4-49)||(10950114-10950159)
chr3 (59-88)||(25781736-25781765)
[»] scaffold0150 (1 HSPs)
scaffold0150 (1-89)||(33341-33428)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11608470 - 11608249
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||||||||||||||| ||||  |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||     
T  11608470 ttatttactgttttaataaatttaactagttgcctcgttgaaacaacaatctctttgaagacgatcttacttatcaatttattacttgaaaacagtttga 11608371  T
Q  101 tgcacttatcaaatttagtcaacaattacacaacatcataaactctagatttgcagaaaaactcttagggatgttacacacaccaacataatataatgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||    
T  11608370 tgcacttatcaaatttagtcaacaattacacaacatcataaactctagatttgcaggaaaactctaagggatgttacatacaccaacataatatactgtt 11608271  T
Q  201 gattgtccactacctattatga 222  Q
    |||||||||||| |||||||||    
T  11608270 gattgtccactatctattatga 11608249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 12866744 - 12866625
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||||||||| |||| |||||| |||||| ||||||||||| | |||   | |||||||||| |||||||  | |||||||| | ||||||||||||    
T  12866744 ttatttactgttt-aatatgtttagctagttgcctagttgaaacgataattcatgtgaagacgattttacttactactttattacgtgaaaacggtttgg 12866646  T
Q  101 tgcacttatcaaatttagtca 121  Q
    ||||||| | |||||||||||    
T  12866645 tgcacttgttaaatttagtca 12866625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 18775814 - 18775929
Alignment:
Q  9 tgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcactta 108  Q
    ||||||||||||| ||| |||||  ||||||||||| ||||||||| || ||| ||||||||||||||   |||||||||| || ||||||||  ||||     
T  18775814 tgttttaataagtctagctagtttcctagttgaaacgacaatctttgtggagatgatcttacttatca--ctattacttaacaatggtttggtaaacttg 18775911  T
Q  109 tcaaatttagtcaacaat 126  Q
     |||||||| ||| ||||    
T  18775912 ccaaatttaatcatcaat 18775929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 670312 - 670352
Alignment:
Q  3 atttactgttttaataagtttagttagttgtctagttgaaa 43  Q
    ||||| ||||||||||||||||| |||||| ||||||||||    
T  670312 atttattgttttaataagtttagctagttgcctagttgaaa 670352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 766348 - 766316
Alignment:
Q  60 gacgatcttacttatcaatttattacttaaaaa 92  Q
    ||||||||||||||||| |||||||||||||||    
T  766348 gacgatcttacttatcactttattacttaaaaa 766316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 27533628 - 27533748
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    |||||| |||||||||||||| | |||||| | ||||||||||| ||||||  | |||| |||||||||||||||| ||||||| || ||||  ||||||    
T  27533628 ttattttctgttttaataagtatcgttagtggcctagttgaaacgacaatccatatgaaaacgatcttacttatcactttattaatttaaaatagtttgg 27533727  T
Q  101 tgcacttatcaaatttagtca 121  Q
    |||||||||||||||||||||    
T  27533728 tgcacttatcaaatttagtca 27533748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31014265 - 31014168
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttg 99  Q
    |||||| ||||||||||||||   |||||||||| |||||||||||| |||||| |  |||| ||||||||||||| |||||||||| ||||| |||||    
T  31014265 ttattttctgttttaataagtaacgttagttgtcgagttgaaacaac-atctttgttgagacaatcttacttatcactttattacttgaaaacagtttg 31014168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 20475153 - 20475242
Alignment:
Q  27 tagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcacttatcaaattt 116  Q
    ||||||||||||||||| ||||||   | || |||||||||||||||||| | |||||||| ||||  |||||||||||||  |||||||    
T  20475153 tagttgtctagttgaaataacaatacatgtggagacgatcttacttatcactatattacttgaaaatagtttggtgcacttgccaaattt 20475242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 20474452 - 20474533
Alignment:
Q  27 tagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcactta 108  Q
    ||||||||||||||||||||||||   | || ||||||| |||||||||| | |||||||| ||||  |||| |||||||||    
T  20474452 tagttgtctagttgaaacaacaatgcatgtggagacgattttacttatcactatattacttgaaaatagtttagtgcactta 20474533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 12564943 - 12564859
Alignment:
Q  4 tttactgtttt-aataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattactt 87  Q
    ||||||||||| ||||| ||||| ||||||  || ||||||||||||||  | || ||||||| |||||||||  ||||||||||    
T  12564943 tttactgttttgaataattttagctagttgcttacttgaaacaacaatccatgtggagacgattttacttatccctttattactt 12564859  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 12496354 - 12496268
Alignment:
Q  9 tgttttaataagtttagtta--gttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaac 93  Q
    ||||||||||||||||||||  |||||||||||||||| ||||| | | | ||||||||||||||||||| ||||||||||||||||    
T  12496354 tgttttaataagtttagttatagttgtctagttgaaacgacaatttatgtaaagacgatcttacttatcactttattacttaaaaac 12496268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 7706567 - 7706461
Alignment:
Q  20 gtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcacttatcaaatttagt 119  Q
    |||||| || ||| ||||| ||||| ||||||  | || ||||||| |||| ||  | ||||||||||  |||| ||||||||||||| |||||||||||    
T  7706567 gtttagctaattgcctagtcgaaacgacaatccctgtggagacgattttacataatactttattacttggaaacagtttggtgcacttgtcaaatttagt 7706468  T
Q  120 caacaat 126  Q
    || ||||    
T  7706467 caccaat 7706461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 29986445 - 29986485
Alignment:
Q  3 atttactgttttaataagtttagttagttgtctagttgaaa 43  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  29986445 atttactgttttaataagttgagctagttgcctagttgaaa 29986485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 50394159 - 50394276
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||| |||||   | || |||| || |||||||  |||||||||||| ||||||||||||    
T  50394159 ttatttattgtattaataagtttagctagttgtctagttgaaacgacaatgcatgtggagacaattttacttactaatttattacttgaaaacggtttgg 50394258  T
Q  101 tgcacttatcaaatttag 118  Q
    ||||| |  |||||||||    
T  50394259 tgcacctgccaaatttag 50394276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 48747411 - 48747317
Alignment:
Q  27 tagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcacttatcaaatttagtca 121  Q
    |||||| ||||||||||| |||||  || || ||||||| ||||||| || | |||||||| |||| ||||||||||||||  ||||||||||||    
T  48747411 tagttgcctagttgaaacgacaatagttgtggagacgattttacttaccactatattacttgaaaaaggtttggtgcacttgccaaatttagtca 48747317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 21556153 - 21556045
Alignment:
Q  9 tgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcactta 108  Q
    ||||||||||||| ||  |||||  ||||||||||||||| ||||| |  ||||||| |||||||  | |||||||||| ||||| ||||| |||| |||    
T  21556153 tgttttaataagtatatctagtttcctagttgaaacaacagtctttatagagacgattttacttactactttattacttgaaaacagtttgatgcattta 21556054  T
Q  109 tcaaattta 117  Q
     ||||||||    
T  21556053 ccaaattta 21556045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 13276555 - 13276515
Alignment:
Q  12 tttaataagtttagttagttgtctagttgaaacaacaatct 52  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  13276555 tttaataagtttagctagttttctagttgaaacaacaatct 13276515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 12590871 - 12590924
Alignment:
Q  48 aatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggt 101  Q
    |||||||||| |||||||||||| ||||| ||||||||||  ||||| ||||||    
T  12590871 aatctttttggagacgatcttacatatcattttattacttgtaaacgatttggt 12590924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 34388456 - 34388332
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||| |||||  |  |  |||| || |||||||| | |||||||||| ||||||||| ||    
T  34388456 ttatttattgttttaataagtttaggtagttgcctagttgaaacgacaattctcgtagagac-attttacttattactttattacttgaaaacggttagg 34388358  T
Q  101 tgcacttatcaaatttagtcaacaat 126  Q
    |||||||  | |||||||||| ||||    
T  34388357 tgcacttgccgaatttagtcatcaat 34388332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 12622889 - 12622824
Alignment:
Q  56 tgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcacttatcaaatttagtca 121  Q
    |||| ||||| ||||||| || |||||||||| ||||||||||| | ||||| |||||||||||||    
T  12622889 tgaatacgattttacttaccactttattacttgaaaacggtttgtttcacttgtcaaatttagtca 12622824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 2361002 - 2361058
Alignment:
Q  65 tcttacttatcaatttattacttaaaaacggtttggtgcacttatcaaatttagtca 121  Q
    |||||||||  | |||||||||| |||||||||||||||||||  ||||||||||||    
T  2361002 tcttacttactactttattacttgaaaacggtttggtgcacttgacaaatttagtca 2361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 24319312 - 24319197
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||| | |||||||||| |||| |||||||||||||||||| ||||||  | |  ||||||| |||||||    ||||||||||  ||||||||| |    
T  24319312 ttatttattattttaataagcttagctagttgtctagttgaaacgacaatcaatgttgagacgattttacttacttctttattactt-gaaacggtttag 24319214  T
Q  101 tgcacttatcaaattta 117  Q
    |||||||  ||||||||    
T  24319213 tgcacttgccaaattta 24319197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33652763 - 33652836
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttat 74  Q
    |||||| ||||| ||||||||   | |||||| | ||||||||| ||||||| | |||||||||||||||||||    
T  33652763 ttattttctgttataataagtaatgctagttgccgagttgaaacgacaatctctatgaagacgatcttacttat 33652836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 9228061 - 9228017
Alignment:
Q  8 ctgttttaataagtttagttagttgtctagttgaaacaacaatct 52  Q
    |||||||||| ||||||| |||||  |||||||||||||||||||    
T  9228061 ctgttttaatgagtttagctagttccctagttgaaacaacaatct 9228017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1813 - 1919
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    |||||||||||||||| |||||||| |||||| ||||||||||| |||||  |  |  ||||||| |||||||  | |||||||||| |||||| || ||    
T  1813 ttatttactgttttaacaagtttagctagttgcctagttgaaacgacaattctcgtagagacgattttacttactactttattacttgaaaacgattcgg 1912  T
Q  101 tgcactt 107  Q
    |||||||    
T  1913 tgcactt 1919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 36976523 - 36976403
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||||||||||||||||||||  |||||  |||||||||  |||||||  | || ||||  | |||||||  | |||||||||| |||| ||||||     
T  36976523 ttatttactgttttaataagtttatctagtttcctagttgaattaacaatccatatggagacacttttacttactactttattacttgaaaaaggtttga 36976424  T
Q  101 tgcacttatcaaatttagtca 121  Q
    |||||||  ||||||||||||    
T  36976423 tgcacttgccaaatttagtca 36976403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 30095867 - 30095805
Alignment:
Q  59 agacgatcttacttatcaatttattacttaaaaacggtttggtgcacttatcaaatttagtca 121  Q
    ||||||| |||||||||||||||||| || ||||| ||||||| |||||  ||||||||||||    
T  30095867 agacgatgttacttatcaatttattatttgaaaacagtttggttcacttggcaaatttagtca 30095805  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 27451848 - 27451945
Alignment:
Q  27 tagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttggtgcacttatcaaatttagtcaaca 124  Q
    |||||| ||||||||||| |||||| || || ||||||| |||||||  | ||||||| || ||| || |||||||||| | |||| |||||||||||    
T  27451848 tagttgcctagttgaaacgacaatccttatggagacgattttacttactactttattatttgaaaccgatttggtgcacatgtcaagtttagtcaaca 27451945  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 50577276 - 50577156
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||||||||||||||| ||||| |||||| || ||  |||   |||||||  || ||||||| ||| |||  | ||||||||| |||| ||||||||    
T  50577276 ttatttactgttttaataaatttagctagttgcctcgtcaaaatggcaatcttcgtggagacgattttatttactactttattactcaaaaccggtttgg 50577177  T
Q  101 tgcacttatcaaatttagtca 121  Q
     || |||  ||||||||||||    
T  50577176 cgcgcttgccaaatttagtca 50577156  T

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Target: scaffold0674 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4966 - 5072
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||||||||||||||||||||| |||||| |||||| |||| ||||| |   |  ||||||| |||||||  | |||||||||  ||||| || |||    
T  4966 ttatttactgttttaataagtttaggtagttgcctagttaaaacgacaatttccgtatagacgattttacttactactttattactagaaaacagtctgg 5065  T
Q  101 tgcactt 107  Q
    |||||||    
T  5066 tgcactt 5072  T

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Target: scaffold0240 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18312 - 18418
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaaaaacggtttgg 100  Q
    ||||||||||||||||||||||||| |||||| |||||| |||| ||||| |   |  ||||||| |||||||  | |||||||||  ||||| || |||    
T  18312 ttatttactgttttaataagtttaggtagttgcctagttaaaacgacaatttccgtatagacgattttacttactactttattactagaaaacagtctgg 18411  T
Q  101 tgcactt 107  Q
    |||||||    
T  18412 tgcactt 18418  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32197394 - 32197352
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaa 43  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||    
T  32197394 ttatttactattttaataagtttagctagttgcctagttgaaa 32197352  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 10950159 - 10950114
Alignment:
Q  4 tttactgttttaataagtttagttagttgtctagttgaaacaacaa 49  Q
    |||| ||||||||||| ||||| |||||||||||||||||| ||||    
T  10950159 tttattgttttaataactttagctagttgtctagttgaaacgacaa 10950114  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 88
Target Start/End: Original strand, 25781736 - 25781765
Alignment:
Q  59 agacgatcttacttatcaatttattactta 88  Q
    ||||||||||||||||||||||||||||||    
T  25781736 agacgatcttacttatcaatttattactta 25781765  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 33341 - 33428
Alignment:
Q  1 ttatttactgttttaataagtttagttagttgtctagttgaaacaacaatctttttgaagacgatcttacttatcaatttattacttaa 89  Q
    ||||||||||||||||||||||||  || ||| ||||||| ||| ||||||| | || |||| ||| ||||||  | ||||||||||||    
T  33341 ttatttactgttttaataagtttacctacttgcctagttgcaacgacaatctatgtggagacaatc-tacttactactttattacttaa 33428  T

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